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Q8BYH8

- CHD9_MOUSE

UniProt

Q8BYH8 - CHD9_MOUSE

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Protein

Chromodomain-helicase-DNA-binding protein 9

Gene

Chd9

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli

Functioni

Acts as a transcriptional coactivator for PPARA and possibly other nuclear receptors. Proposed to be a ATP-dependent chromatin remodeling protein. Has DNA-dependent ATPase activity and binds to A/T-rich DNA (By similarity). Associates with A/T-rich regulatory regions in promoters of genes that participate in the differentiation of progenitors during osteogenesis.By similarity

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi884 – 8918ATPPROSITE-ProRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: UniProtKB-KW
  3. helicase activity Source: UniProtKB-KW

GO - Biological processi

  1. chromatin modification Source: UniProtKB-KW
  2. regulation of transcription, DNA-templated Source: UniProtKB-KW
  3. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator, Helicase, Hydrolase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiREACT_118837. Rora activates circadian gene expression.
REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
REACT_198351. RORA activates circadian gene expression.
REACT_198352. REV-ERBA represses gene expression.
REACT_198602. PPARA activates gene expression.
REACT_198969. Activation of gene expression by SREBF (SREBP).
REACT_205251. Transcriptional activation of mitochondrial biogenesis.
REACT_241925. Circadian Clock.
REACT_252217. Transcriptional regulation of white adipocyte differentiation.
REACT_257219. Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha).
REACT_268398. Orphan transporters.

Names & Taxonomyi

Protein namesi
Recommended name:
Chromodomain-helicase-DNA-binding protein 9 (EC:3.6.4.12)
Short name:
CHD-9
Alternative name(s):
ATP-dependent helicase CHD9
PPAR-alpha-interacting complex protein 320 kDa
Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
Gene namesi
Name:Chd9
Synonyms:Kiaa0308, Pric320
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 8

Organism-specific databases

MGIiMGI:1924001. Chd9.

Subcellular locationi

Cytoplasm By similarity. Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-KW
  2. nucleus Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 28852885Chromodomain-helicase-DNA-binding protein 9PRO_0000233173Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei498 – 4981N6-acetyllysineBy similarity
Modified residuei549 – 5491PhosphoserineBy similarity
Modified residuei610 – 6101PhosphoserineBy similarity
Modified residuei1467 – 14671PhosphoserineBy similarity
Modified residuei1471 – 14711PhosphoserineBy similarity
Modified residuei2025 – 20251PhosphoserineBy similarity
Modified residuei2057 – 20571PhosphoserineBy similarity
Modified residuei2058 – 20581PhosphoserineBy similarity

Post-translational modificationi

Phosphorylated on serine and tyrosine residues.By similarity

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

MaxQBiQ8BYH8.
PaxDbiQ8BYH8.
PRIDEiQ8BYH8.

PTM databases

PhosphoSiteiQ8BYH8.

Expressioni

Tissue specificityi

Expressed in osteoprogenitor cells during development and in mature bone (at protein level).1 Publication

Developmental stagei

Expressed from embryonic day 16.5 dpc in mesenchymal cartilage surrounding bone cartilage and newly formed bone trabecular spicules. Detected in bone sections of 4-day-old newborn and 3-week-old mice.1 Publication

Gene expression databases

BgeeiQ8BYH8.
CleanExiMM_CHD9.
ExpressionAtlasiQ8BYH8. baseline and differential.
GenevestigatoriQ8BYH8.

Interactioni

Subunit structurei

Interacts with PPARA. Probably interacts with ESR1 and NR1I3 (By similarity).By similarity

Structurei

3D structure databases

ProteinModelPortaliQ8BYH8.
SMRiQ8BYH8. Positions 714-1326, 2472-2519, 2535-2616.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini689 – 76072Chromo 1PROSITE-ProRule annotationAdd
BLAST
Domaini772 – 83867Chromo 2PROSITE-ProRule annotationAdd
BLAST
Domaini871 – 1045175Helicase ATP-bindingPROSITE-ProRule annotationAdd
BLAST
Domaini1185 – 1336152Helicase C-terminalPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni2331 – 2471141Binds A/T-rich DNABy similarityAdd
BLAST
Regioni2428 – 24358A.T hook-like

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi867 – 8715LXXLL motif 1
Motifi996 – 9994DEAH box
Motifi1035 – 10395LXXLL motif 2
Motifi2030 – 20345LXXLL motif 3
Motifi2710 – 27145LXXLL motif 4
Motifi2782 – 27876LXXLL motif 5

Sequence similaritiesi

Belongs to the SNF2/RAD54 helicase family.Curated
Contains 2 chromo domains.PROSITE-ProRule annotation
Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG0553.
GeneTreeiENSGT00760000119067.
HOGENOMiHOG000246942.
HOVERGENiHBG081150.
InParanoidiQ8BYH8.
KOiK14438.
OMAiQEDKGGT.
OrthoDBiEOG7NSB1C.
PhylomeDBiQ8BYH8.
TreeFamiTF313572.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiPS50013. CHROMO_2. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q8BYH8-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTDPMMDFFD DANLFGETLE GLSDDTFVQP GPVSLVDELN LGAEFEPLHI
60 70 80 90 100
DSLNHVQGTP THQKMADFEQ LSQFDSMKFH PVNQSFGSPV EHVLSPHSQF
110 120 130 140 150
NCSPIHPPNQ PNGLFQDVAD GSPMWGHQTA TGLANQNGSP FHQPGHSHSL
160 170 180 190 200
HQNKSFVAHP DFALFQASEH QTQCSSLHSQ QSRSNLNPGQ NSLGQAKNFL
210 220 230 240 250
DANVSGAHRV NVNHLATAPS SQQTLPVQFS PTANPPAHFL KCSSHQEGNY
260 270 280 290 300
NRPSPSMTSC SVSNSQQFPS HYSFSSGHVS PSSLLQSSAG LAPGHTNQAL
310 320 330 340 350
SDFAGSNSFS PHRGMKQEPT QHLLNPTPSL NSNNFQILHS SHPQGNYSNS
360 370 380 390 400
KLSPVHMNFP DPVDAGPPVG HFNDHAETNG FSSLEENLLH HVDSHAEPFA
410 420 430 440 450
GLDPEDLLQE GLLPQFDESP FGQDNSNHVL DHDLDRQFTS HLVSRPSDMA
460 470 480 490 500
QTQLQYQARG WPSPLSTNHQ HLHSRNHLCL QRQPPSSKKS DGSGTYTKLQ
510 520 530 540 550
NTQVRVMSEK KPRKRVESES KQEKANRIIS EAIARAKERG ERNIPRVMSP
560 570 580 590 600
ENFPSASVEG KEEKRGRRMK SKPKDRDNKK PKTYSKLKEK TKIGKLIITL
610 620 630 640 650
GKKHKRRNES SDELSDAEQR SQHTFKEQHS QKRRSNRQIK RKKYAEDAEG
660 670 680 690 700
KQSEEEVKGS LRVKRNSAPP PGEQPLQLFV ENPSEEDAAI VDKILACRTV
710 720 730 740 750
KKEVSPGVML DIEEFFVKYK NYSYLHCEWA TEQQLLKDKR IQQKIKRFKL
760 770 780 790 800
RQAQRAHFLA DMEEEPFNPD YVEVDRILEV SFCEDKDTGE SVIYYLVKWC
810 820 830 840 850
SLPYEDSTWE LKEDVDLAKI EEFEQLQASR PDTRHLDRPP SNIWKKIEQS
860 870 880 890 900
REYKNGNQLR EYQLEGLNWL LFNWYNRRNC ILADEMGLGK TIQSITFLYE
910 920 930 940 950
ILLTGIRGPF LIIAPLSTIA NWEREFRTWT DINVVVYHGS LISRQMIQQY
960 970 980 990 1000
EMYFRDSQGR IIRGAYRFQA IITTFEMILG GCGELNAIDW RCVIIDEAHR
1010 1020 1030 1040 1050
LKNKNCKLLE GLKLMNLEHK VLLTGTPLQN TVEELFSLLH FLEPLRFPSE
1060 1070 1080 1090 1100
STFMQEFGDL KTEEQVQKLQ AILKPMMLRR LKEDVEKKLA PKEETIIEVE
1110 1120 1130 1140 1150
LTNIQKKYYR AILEKNFSFL SKGAGQTNVP NLVNTMMELR KCCNHPYLIK
1160 1170 1180 1190 1200
GAEEKILGEF RDTYNPSASD FHLQAMIQSA GKLVLIDKLL PKMKAGGHKV
1210 1220 1230 1240 1250
LIFSQMVRCL DILEDYLIHK RYLYERIDGR VRGNLRQAAI DRFSKPDSDR
1260 1270 1280 1290 1300
FVFLLCTRAG GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQNKAV
1310 1320 1330 1340 1350
KVYRLVTRNS YEREMFDRAS LKLGLDKAVL QSMSGRDSNV SGIQQLSKKE
1360 1370 1380 1390 1400
IEDLLRRGAY GAIMEEEDEG SKFCEEDIDQ ILLRRTKTIT IESEGRGSTF
1410 1420 1430 1440 1450
AKASFVASGN RTDISLDDPN FWQKWAKKAE LDIDTISGRN SLVIDTPRIR
1460 1470 1480 1490 1500
KQTRPFSATK DELAELSEAE SEGEEKPKLR RPCDRSGGYG RTECFRVEKN
1510 1520 1530 1540 1550
LLVYGWGRWR EILSHGRFKR QLNEHDVEVI CRALLAYCLI HYRGDEKIKG
1560 1570 1580 1590 1600
FIWDLITPTE DGQTRELQNH LGLSAPVPRG RKGKKVKTQT SSFDIQKAEW
1610 1620 1630 1640 1650
LRKYNPEQLL QDEGYKKHVK HHCNKVLLRV RMLYYLKQEV IGNESQKVFD
1660 1670 1680 1690 1700
GVDASDIDVW VPEPDHSEVP AAWWDFDADK SLLIGVFKHG YEKYNTIRAD
1710 1720 1730 1740 1750
PALCFLERVG KPDDKAVAAE QRANDYMDGD VEDPEYKPAP AIFKDDIEDD
1760 1770 1780 1790 1800
VSSPGDLVIA DGEGQLMEGD KVYWPTPSAL TTRLRRLITA YQRTNKNRHI
1810 1820 1830 1840 1850
QQMQPTFSLP ANAMQPLYEE ATLNPKMAAK IERQQRWTRR EEADFYRVVS
1860 1870 1880 1890 1900
TFGVVFDPDR GQFDWTKFRA LARLHKKTDN SLEKYLCAFM SMCRRVCRLP
1910 1920 1930 1940 1950
SKEELVDPNI FIQPITEERA SRTLYRIELL RKVREQALRH PQLFERLKLC
1960 1970 1980 1990 2000
HPNPDLPIWW ECGSHDRDLL IGAAKHGVSR TDYHILRDPE LSFMAAQRNY
2010 2020 2030 2040 2050
NQSKAAHSRT SAPLLQQYQV ALSASPLTSL PRLLGAKGTL LEDMKVKSES
2060 2070 2080 2090 2100
LTEEPQSSEE ESMSSMETRT RVKSEPVSPK NGVLSQATGD QKSGGKSETD
2110 2120 2130 2140 2150
RRMVAARTEP LTPNPASKKP RVHKRGSQSS SDSDSDSARS SCSSRSSSSS
2160 2170 2180 2190 2200
SSSSSCSHSR SGSSSSSSSS CSSASSSSSS SSSSSSSSSS SSSEESDSEE
2210 2220 2230 2240 2250
DVQKREGTPH RKAYDEESVA SLSTTQDETQ DSFQANNGTP ESAYLLQGGY
2260 2270 2280 2290 2300
MLAASYWPKD RVMINRLDSI CQTVLKGKWP SARRHYDANT VASFYTTKLL
2310 2320 2330 2340 2350
DSPGAATERG EPSVPTPPAV AVREEHEQSA QMSKVKKHVR EKEFTVKIKD
2360 2370 2380 2390 2400
EGGLKLTFQK QGLAQKRPFD GEDGALGQQQ YLTRLRELQS TSETSLVNLP
2410 2420 2430 2440 2450
KAVPASGTSI QPTLGANGAI LDSQPIVKKR RGRRRNVEGA DILFLNRNKP
2460 2470 2480 2490 2500
PNHIPTGMNP ALSYPQPQRI PDTESPVPVI NLKDGTRLAG DDAPKRKDLD
2510 2520 2530 2540 2550
RWLKEHPGYV EDLGAFIPRV QLHEGRPKQK RHRCRNPNKL DINSLTGEER
2560 2570 2580 2590 2600
VQLINRRNAR KVGGAFAPPL KDLCRFLKEN SEYGVAPEWG DVVKQSGFLP
2610 2620 2630 2640 2650
ESMFERILTG PVVREEVSRR GRRPKSGIAK ATTAAAVPAG SVPGNPLLAN
2660 2670 2680 2690 2700
GLLPGVDLTA LQALQQNLQN LQSLQVTAGL MGMPAGLSSG GETKNMAAMF
2710 2720 2730 2740 2750
PMLFSGMAGL PNLLGMGGLL SKTAESGAEE KRGNDSKELE GKKERTESQS
2760 2770 2780 2790 2800
PENGGERCVP GSPSTSSTAA LSSAAAAKPI ALNPLLLSNI LYPGMLLTPG
2810 2820 2830 2840 2850
LNLHLPTLSQ SNAFDVQKNK SDDLDSSKSV EIKEENSRVR DQEEKGGTEP
2860 2870 2880
SPLNENSTDE GSERASSGSD SSSSSSEDSD SSNED
Length:2,885
Mass (Da):323,860
Last modified:May 2, 2006 - v2
Checksum:iB820BE8EA9CC2915
GO
Isoform 2 (identifier: Q8BYH8-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     2335-2350: Missing.

Show »
Length:2,869
Mass (Da):321,894
Checksum:iA684A06A35C83F91
GO

Sequence cautioni

The sequence AAH52896.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti101 – 1011N → I in BAC39090. (PubMed:16141072)Curated
Sequence conflicti584 – 5841Y → D in BAC28711. (PubMed:16141072)Curated

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei2335 – 235016Missing in isoform 2. 2 PublicationsVSP_018087Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ127229 mRNA. Translation: AAZ73184.2.
AK034446 mRNA. Translation: BAC28711.1.
AK039562 mRNA. Translation: BAC30385.1.
AK084000 mRNA. Translation: BAC39090.1.
AB093226 mRNA. Translation: BAC41410.3.
BC052896 mRNA. Translation: AAH52896.1. Different initiation.
CCDSiCCDS22517.1. [Q8BYH8-2]
RefSeqiNP_796198.1. NM_177224.2. [Q8BYH8-2]
XP_006530631.1. XM_006530568.1. [Q8BYH8-1]
XP_006530632.1. XM_006530569.1. [Q8BYH8-1]
UniGeneiMm.100615.

Genome annotation databases

EnsembliENSMUST00000048665; ENSMUSP00000046356; ENSMUSG00000056608. [Q8BYH8-2]
ENSMUST00000109614; ENSMUSP00000105243; ENSMUSG00000056608. [Q8BYH8-1]
GeneIDi109151.
KEGGimmu:109151.
UCSCiuc009msf.2. mouse. [Q8BYH8-2]
uc009msi.2. mouse. [Q8BYH8-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ127229 mRNA. Translation: AAZ73184.2 .
AK034446 mRNA. Translation: BAC28711.1 .
AK039562 mRNA. Translation: BAC30385.1 .
AK084000 mRNA. Translation: BAC39090.1 .
AB093226 mRNA. Translation: BAC41410.3 .
BC052896 mRNA. Translation: AAH52896.1 . Different initiation.
CCDSi CCDS22517.1. [Q8BYH8-2 ]
RefSeqi NP_796198.1. NM_177224.2. [Q8BYH8-2 ]
XP_006530631.1. XM_006530568.1. [Q8BYH8-1 ]
XP_006530632.1. XM_006530569.1. [Q8BYH8-1 ]
UniGenei Mm.100615.

3D structure databases

ProteinModelPortali Q8BYH8.
SMRi Q8BYH8. Positions 714-1326, 2472-2519, 2535-2616.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q8BYH8.

Proteomic databases

MaxQBi Q8BYH8.
PaxDbi Q8BYH8.
PRIDEi Q8BYH8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000048665 ; ENSMUSP00000046356 ; ENSMUSG00000056608 . [Q8BYH8-2 ]
ENSMUST00000109614 ; ENSMUSP00000105243 ; ENSMUSG00000056608 . [Q8BYH8-1 ]
GeneIDi 109151.
KEGGi mmu:109151.
UCSCi uc009msf.2. mouse. [Q8BYH8-2 ]
uc009msi.2. mouse. [Q8BYH8-1 ]

Organism-specific databases

CTDi 80205.
MGIi MGI:1924001. Chd9.
Rougei Search...

Phylogenomic databases

eggNOGi COG0553.
GeneTreei ENSGT00760000119067.
HOGENOMi HOG000246942.
HOVERGENi HBG081150.
InParanoidi Q8BYH8.
KOi K14438.
OMAi QEDKGGT.
OrthoDBi EOG7NSB1C.
PhylomeDBi Q8BYH8.
TreeFami TF313572.

Enzyme and pathway databases

Reactomei REACT_118837. Rora activates circadian gene expression.
REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
REACT_198351. RORA activates circadian gene expression.
REACT_198352. REV-ERBA represses gene expression.
REACT_198602. PPARA activates gene expression.
REACT_198969. Activation of gene expression by SREBF (SREBP).
REACT_205251. Transcriptional activation of mitochondrial biogenesis.
REACT_241925. Circadian Clock.
REACT_252217. Transcriptional regulation of white adipocyte differentiation.
REACT_257219. Regulation of lipid metabolism by Peroxisome proliferator-activated receptor alpha (PPARalpha).
REACT_268398. Orphan transporters.

Miscellaneous databases

ChiTaRSi Chd9. mouse.
NextBioi 361700.
PROi Q8BYH8.
SOURCEi Search...

Gene expression databases

Bgeei Q8BYH8.
CleanExi MM_CHD9.
ExpressionAtlasi Q8BYH8. baseline and differential.
Genevestigatori Q8BYH8.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view ]
Pfami PF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view ]
SMARTi SM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEi PS50013. CHROMO_2. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex."
    Surapureddi S., Viswakarma N., Yu S., Guo D., Rao M.S., Reddy J.K.
    Biochem. Biophys. Res. Commun. 343:535-543(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1104 (ISOFORMS 1/2).
    Strain: C57BL/6J.
    Tissue: Diencephalon, Spinal cord and Spinal ganglion.
  3. "Prediction of the coding sequences of mouse homologues of KIAA gene: I. The complete nucleotide sequences of 100 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
    Okazaki N., Kikuno R., Ohara R., Inamoto S., Hara Y., Nagase T., Ohara O., Koga H.
    DNA Res. 9:179-188(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 980-2885 (ISOFORM 2).
    Tissue: Pancreatic islet.
  4. Okazaki N., Kikuno R., Nagase T., Ohara O., Koga H.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2207-2885 (ISOFORM 1).
    Strain: C3H/He.
    Tissue: Mesenchymal stem cell.
  6. "In vivo association of CReMM/CHD9 with promoters in osteogenic cells."
    Shur I., Socher R., Benayahu D.
    J. Cell. Physiol. 207:374-378(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.

Entry informationi

Entry nameiCHD9_MOUSE
AccessioniPrimary (citable) accession number: Q8BYH8
Secondary accession number(s): Q7TMV5
, Q8BJG8, Q8BZJ2, Q8CHG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 2, 2006
Last sequence update: May 2, 2006
Last modified: November 26, 2014
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3