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Q8BYH8

- CHD9_MOUSE

UniProt

Q8BYH8 - CHD9_MOUSE

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Protein
Chromodomain-helicase-DNA-binding protein 9
Gene
Chd9, Kiaa0308, Pric320
Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5 - Experimental evidence at protein leveli

Functioni

Acts as a transcriptional coactivator for PPARA and possibly other nuclear receptors. Proposed to be a ATP-dependent chromatin remodeling protein. Has DNA-dependent ATPase activity and binds to A/T-rich DNA By similarity. Associates with A/T-rich regulatory regions in promoters of genes that participate in the differentiation of progenitors during osteogenesis.

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi884 – 8918ATP Reviewed prediction

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: UniProtKB-KW
  3. helicase activity Source: UniProtKB-KW

GO - Biological processi

  1. chromatin modification Source: UniProtKB-KW
  2. regulation of transcription, DNA-templated Source: UniProtKB-KW
  3. transcription, DNA-templated Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Chromatin regulator, Helicase, Hydrolase

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

ATP-binding, DNA-binding, Nucleotide-binding

Enzyme and pathway databases

ReactomeiREACT_118837. Rora activates circadian gene expression.
REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
REACT_198351. RORA activates circadian gene expression.
REACT_198352. REV-ERBA represses gene expression.
REACT_198602. PPARA activates gene expression.
REACT_198969. Activation of gene expression by SREBF (SREBP).
REACT_205251. Transcriptional activation of mitochondrial biogenesis.

Names & Taxonomyi

Protein namesi
Recommended name:
Chromodomain-helicase-DNA-binding protein 9 (EC:3.6.4.12)
Short name:
CHD-9
Alternative name(s):
ATP-dependent helicase CHD9
PPAR-alpha-interacting complex protein 320 kDa
Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
Gene namesi
Name:Chd9
Synonyms:Kiaa0308, Pric320
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 8

Organism-specific databases

MGIiMGI:1924001. Chd9.

Subcellular locationi

Cytoplasm By similarity. Nucleus By similarity

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 28852885Chromodomain-helicase-DNA-binding protein 9
PRO_0000233173Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei498 – 4981N6-acetyllysine By similarity
Modified residuei549 – 5491Phosphoserine By similarity
Modified residuei610 – 6101Phosphoserine By similarity
Modified residuei1467 – 14671Phosphoserine By similarity
Modified residuei1471 – 14711Phosphoserine By similarity
Modified residuei2025 – 20251Phosphoserine By similarity
Modified residuei2057 – 20571Phosphoserine By similarity
Modified residuei2058 – 20581Phosphoserine By similarity

Post-translational modificationi

Phosphorylated on serine and tyrosine residues By similarity.

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ8BYH8.
PRIDEiQ8BYH8.

PTM databases

PhosphoSiteiQ8BYH8.

Expressioni

Tissue specificityi

Expressed in osteoprogenitor cells during development and in mature bone (at protein level).1 Publication

Developmental stagei

Expressed from embryonic day 16.5 dpc in mesenchymal cartilage surrounding bone cartilage and newly formed bone trabecular spicules. Detected in bone sections of 4-day-old newborn and 3-week-old mice.1 Publication

Gene expression databases

ArrayExpressiQ8BYH8.
BgeeiQ8BYH8.
CleanExiMM_CHD9.
GenevestigatoriQ8BYH8.

Interactioni

Subunit structurei

Interacts with PPARA. Probably interacts with ESR1 and NR1I3 By similarity.

Structurei

3D structure databases

ProteinModelPortaliQ8BYH8.
SMRiQ8BYH8. Positions 714-1326, 2472-2519, 2535-2616.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini689 – 76072Chromo 1
Add
BLAST
Domaini772 – 83867Chromo 2
Add
BLAST
Domaini871 – 1045175Helicase ATP-binding
Add
BLAST
Domaini1185 – 1336152Helicase C-terminal
Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni2331 – 2471141Binds A/T-rich DNA By similarity
Add
BLAST
Regioni2428 – 24358A.T hook-like

Motif

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Motifi867 – 8715LXXLL motif 1
Motifi996 – 9994DEAH box
Motifi1035 – 10395LXXLL motif 2
Motifi2030 – 20345LXXLL motif 3
Motifi2710 – 27145LXXLL motif 4
Motifi2782 – 27876LXXLL motif 5

Sequence similaritiesi

Contains 2 chromo domains.

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG0553.
GeneTreeiENSGT00560000077077.
HOGENOMiHOG000246942.
HOVERGENiHBG081150.
InParanoidiQ8BYH8.
KOiK14438.
OMAiQEDKGGT.
OrthoDBiEOG7NSB1C.
PhylomeDBiQ8BYH8.
TreeFamiTF313572.

Family and domain databases

Gene3Di3.40.50.300. 2 hits.
InterProiIPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view]
PfamiPF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view]
SMARTiSM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view]
SUPFAMiSSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEiPS50013. CHROMO_2. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. Align

Isoform 1 (identifier: Q8BYH8-1) [UniParc]FASTAAdd to Basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

MTDPMMDFFD DANLFGETLE GLSDDTFVQP GPVSLVDELN LGAEFEPLHI     50
DSLNHVQGTP THQKMADFEQ LSQFDSMKFH PVNQSFGSPV EHVLSPHSQF 100
NCSPIHPPNQ PNGLFQDVAD GSPMWGHQTA TGLANQNGSP FHQPGHSHSL 150
HQNKSFVAHP DFALFQASEH QTQCSSLHSQ QSRSNLNPGQ NSLGQAKNFL 200
DANVSGAHRV NVNHLATAPS SQQTLPVQFS PTANPPAHFL KCSSHQEGNY 250
NRPSPSMTSC SVSNSQQFPS HYSFSSGHVS PSSLLQSSAG LAPGHTNQAL 300
SDFAGSNSFS PHRGMKQEPT QHLLNPTPSL NSNNFQILHS SHPQGNYSNS 350
KLSPVHMNFP DPVDAGPPVG HFNDHAETNG FSSLEENLLH HVDSHAEPFA 400
GLDPEDLLQE GLLPQFDESP FGQDNSNHVL DHDLDRQFTS HLVSRPSDMA 450
QTQLQYQARG WPSPLSTNHQ HLHSRNHLCL QRQPPSSKKS DGSGTYTKLQ 500
NTQVRVMSEK KPRKRVESES KQEKANRIIS EAIARAKERG ERNIPRVMSP 550
ENFPSASVEG KEEKRGRRMK SKPKDRDNKK PKTYSKLKEK TKIGKLIITL 600
GKKHKRRNES SDELSDAEQR SQHTFKEQHS QKRRSNRQIK RKKYAEDAEG 650
KQSEEEVKGS LRVKRNSAPP PGEQPLQLFV ENPSEEDAAI VDKILACRTV 700
KKEVSPGVML DIEEFFVKYK NYSYLHCEWA TEQQLLKDKR IQQKIKRFKL 750
RQAQRAHFLA DMEEEPFNPD YVEVDRILEV SFCEDKDTGE SVIYYLVKWC 800
SLPYEDSTWE LKEDVDLAKI EEFEQLQASR PDTRHLDRPP SNIWKKIEQS 850
REYKNGNQLR EYQLEGLNWL LFNWYNRRNC ILADEMGLGK TIQSITFLYE 900
ILLTGIRGPF LIIAPLSTIA NWEREFRTWT DINVVVYHGS LISRQMIQQY 950
EMYFRDSQGR IIRGAYRFQA IITTFEMILG GCGELNAIDW RCVIIDEAHR 1000
LKNKNCKLLE GLKLMNLEHK VLLTGTPLQN TVEELFSLLH FLEPLRFPSE 1050
STFMQEFGDL KTEEQVQKLQ AILKPMMLRR LKEDVEKKLA PKEETIIEVE 1100
LTNIQKKYYR AILEKNFSFL SKGAGQTNVP NLVNTMMELR KCCNHPYLIK 1150
GAEEKILGEF RDTYNPSASD FHLQAMIQSA GKLVLIDKLL PKMKAGGHKV 1200
LIFSQMVRCL DILEDYLIHK RYLYERIDGR VRGNLRQAAI DRFSKPDSDR 1250
FVFLLCTRAG GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQNKAV 1300
KVYRLVTRNS YEREMFDRAS LKLGLDKAVL QSMSGRDSNV SGIQQLSKKE 1350
IEDLLRRGAY GAIMEEEDEG SKFCEEDIDQ ILLRRTKTIT IESEGRGSTF 1400
AKASFVASGN RTDISLDDPN FWQKWAKKAE LDIDTISGRN SLVIDTPRIR 1450
KQTRPFSATK DELAELSEAE SEGEEKPKLR RPCDRSGGYG RTECFRVEKN 1500
LLVYGWGRWR EILSHGRFKR QLNEHDVEVI CRALLAYCLI HYRGDEKIKG 1550
FIWDLITPTE DGQTRELQNH LGLSAPVPRG RKGKKVKTQT SSFDIQKAEW 1600
LRKYNPEQLL QDEGYKKHVK HHCNKVLLRV RMLYYLKQEV IGNESQKVFD 1650
GVDASDIDVW VPEPDHSEVP AAWWDFDADK SLLIGVFKHG YEKYNTIRAD 1700
PALCFLERVG KPDDKAVAAE QRANDYMDGD VEDPEYKPAP AIFKDDIEDD 1750
VSSPGDLVIA DGEGQLMEGD KVYWPTPSAL TTRLRRLITA YQRTNKNRHI 1800
QQMQPTFSLP ANAMQPLYEE ATLNPKMAAK IERQQRWTRR EEADFYRVVS 1850
TFGVVFDPDR GQFDWTKFRA LARLHKKTDN SLEKYLCAFM SMCRRVCRLP 1900
SKEELVDPNI FIQPITEERA SRTLYRIELL RKVREQALRH PQLFERLKLC 1950
HPNPDLPIWW ECGSHDRDLL IGAAKHGVSR TDYHILRDPE LSFMAAQRNY 2000
NQSKAAHSRT SAPLLQQYQV ALSASPLTSL PRLLGAKGTL LEDMKVKSES 2050
LTEEPQSSEE ESMSSMETRT RVKSEPVSPK NGVLSQATGD QKSGGKSETD 2100
RRMVAARTEP LTPNPASKKP RVHKRGSQSS SDSDSDSARS SCSSRSSSSS 2150
SSSSSCSHSR SGSSSSSSSS CSSASSSSSS SSSSSSSSSS SSSEESDSEE 2200
DVQKREGTPH RKAYDEESVA SLSTTQDETQ DSFQANNGTP ESAYLLQGGY 2250
MLAASYWPKD RVMINRLDSI CQTVLKGKWP SARRHYDANT VASFYTTKLL 2300
DSPGAATERG EPSVPTPPAV AVREEHEQSA QMSKVKKHVR EKEFTVKIKD 2350
EGGLKLTFQK QGLAQKRPFD GEDGALGQQQ YLTRLRELQS TSETSLVNLP 2400
KAVPASGTSI QPTLGANGAI LDSQPIVKKR RGRRRNVEGA DILFLNRNKP 2450
PNHIPTGMNP ALSYPQPQRI PDTESPVPVI NLKDGTRLAG DDAPKRKDLD 2500
RWLKEHPGYV EDLGAFIPRV QLHEGRPKQK RHRCRNPNKL DINSLTGEER 2550
VQLINRRNAR KVGGAFAPPL KDLCRFLKEN SEYGVAPEWG DVVKQSGFLP 2600
ESMFERILTG PVVREEVSRR GRRPKSGIAK ATTAAAVPAG SVPGNPLLAN 2650
GLLPGVDLTA LQALQQNLQN LQSLQVTAGL MGMPAGLSSG GETKNMAAMF 2700
PMLFSGMAGL PNLLGMGGLL SKTAESGAEE KRGNDSKELE GKKERTESQS 2750
PENGGERCVP GSPSTSSTAA LSSAAAAKPI ALNPLLLSNI LYPGMLLTPG 2800
LNLHLPTLSQ SNAFDVQKNK SDDLDSSKSV EIKEENSRVR DQEEKGGTEP 2850
SPLNENSTDE GSERASSGSD SSSSSSEDSD SSNED 2885
Length:2,885
Mass (Da):323,860
Last modified:May 2, 2006 - v2
Checksum:iB820BE8EA9CC2915
GO
Isoform 2 (identifier: Q8BYH8-2) [UniParc]FASTAAdd to Basket

The sequence of this isoform differs from the canonical sequence as follows:
     2335-2350: Missing.

Show »
Length:2,869
Mass (Da):321,894
Checksum:iA684A06A35C83F91
GO

Sequence cautioni

The sequence AAH52896.1 differs from that shown. Reason: Erroneous initiation.

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei2335 – 235016Missing in isoform 2.
VSP_018087Add
BLAST

Sequence conflict

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti101 – 1011N → I in BAC39090. 1 Publication
Sequence conflicti584 – 5841Y → D in BAC28711. 1 Publication

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ127229 mRNA. Translation: AAZ73184.2.
AK034446 mRNA. Translation: BAC28711.1.
AK039562 mRNA. Translation: BAC30385.1.
AK084000 mRNA. Translation: BAC39090.1.
AB093226 mRNA. Translation: BAC41410.3.
BC052896 mRNA. Translation: AAH52896.1. Different initiation.
CCDSiCCDS22517.1. [Q8BYH8-2]
RefSeqiNP_796198.1. NM_177224.2. [Q8BYH8-2]
XP_006530631.1. XM_006530568.1. [Q8BYH8-1]
XP_006530632.1. XM_006530569.1. [Q8BYH8-1]
UniGeneiMm.100615.

Genome annotation databases

EnsembliENSMUST00000048665; ENSMUSP00000046356; ENSMUSG00000056608. [Q8BYH8-2]
ENSMUST00000109614; ENSMUSP00000105243; ENSMUSG00000056608. [Q8BYH8-1]
GeneIDi109151.
KEGGimmu:109151.
UCSCiuc009msf.2. mouse. [Q8BYH8-2]
uc009msi.2. mouse. [Q8BYH8-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
DQ127229 mRNA. Translation: AAZ73184.2 .
AK034446 mRNA. Translation: BAC28711.1 .
AK039562 mRNA. Translation: BAC30385.1 .
AK084000 mRNA. Translation: BAC39090.1 .
AB093226 mRNA. Translation: BAC41410.3 .
BC052896 mRNA. Translation: AAH52896.1 . Different initiation.
CCDSi CCDS22517.1. [Q8BYH8-2 ]
RefSeqi NP_796198.1. NM_177224.2. [Q8BYH8-2 ]
XP_006530631.1. XM_006530568.1. [Q8BYH8-1 ]
XP_006530632.1. XM_006530569.1. [Q8BYH8-1 ]
UniGenei Mm.100615.

3D structure databases

ProteinModelPortali Q8BYH8.
SMRi Q8BYH8. Positions 714-1326, 2472-2519, 2535-2616.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q8BYH8.

Proteomic databases

PaxDbi Q8BYH8.
PRIDEi Q8BYH8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000048665 ; ENSMUSP00000046356 ; ENSMUSG00000056608 . [Q8BYH8-2 ]
ENSMUST00000109614 ; ENSMUSP00000105243 ; ENSMUSG00000056608 . [Q8BYH8-1 ]
GeneIDi 109151.
KEGGi mmu:109151.
UCSCi uc009msf.2. mouse. [Q8BYH8-2 ]
uc009msi.2. mouse. [Q8BYH8-1 ]

Organism-specific databases

CTDi 80205.
MGIi MGI:1924001. Chd9.
Rougei Search...

Phylogenomic databases

eggNOGi COG0553.
GeneTreei ENSGT00560000077077.
HOGENOMi HOG000246942.
HOVERGENi HBG081150.
InParanoidi Q8BYH8.
KOi K14438.
OMAi QEDKGGT.
OrthoDBi EOG7NSB1C.
PhylomeDBi Q8BYH8.
TreeFami TF313572.

Enzyme and pathway databases

Reactomei REACT_118837. Rora activates circadian gene expression.
REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
REACT_198351. RORA activates circadian gene expression.
REACT_198352. REV-ERBA represses gene expression.
REACT_198602. PPARA activates gene expression.
REACT_198969. Activation of gene expression by SREBF (SREBP).
REACT_205251. Transcriptional activation of mitochondrial biogenesis.

Miscellaneous databases

ChiTaRSi CHD9. mouse.
NextBioi 361700.
PROi Q8BYH8.
SOURCEi Search...

Gene expression databases

ArrayExpressi Q8BYH8.
Bgeei Q8BYH8.
CleanExi MM_CHD9.
Genevestigatori Q8BYH8.

Family and domain databases

Gene3Di 3.40.50.300. 2 hits.
InterProi IPR006576. BRK_domain.
IPR023780. Chromo_domain.
IPR000953. Chromo_domain/shadow.
IPR016197. Chromodomain-like.
IPR014001. Helicase_ATP-bd.
IPR001650. Helicase_C.
IPR027417. P-loop_NTPase.
IPR000330. SNF2_N.
[Graphical view ]
Pfami PF07533. BRK. 2 hits.
PF00385. Chromo. 2 hits.
PF00271. Helicase_C. 1 hit.
PF00176. SNF2_N. 1 hit.
[Graphical view ]
SMARTi SM00592. BRK. 2 hits.
SM00298. CHROMO. 2 hits.
SM00487. DEXDc. 1 hit.
SM00490. HELICc. 1 hit.
[Graphical view ]
SUPFAMi SSF52540. SSF52540. 2 hits.
SSF54160. SSF54160. 2 hits.
PROSITEi PS50013. CHROMO_2. 1 hit.
PS51192. HELICASE_ATP_BIND_1. 1 hit.
PS51194. HELICASE_CTER. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex."
    Surapureddi S., Viswakarma N., Yu S., Guo D., Rao M.S., Reddy J.K.
    Biochem. Biophys. Res. Commun. 343:535-543(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
  2. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1104 (ISOFORMS 1/2).
    Strain: C57BL/6J.
    Tissue: Diencephalon, Spinal cord and Spinal ganglion.
  3. "Prediction of the coding sequences of mouse homologues of KIAA gene: I. The complete nucleotide sequences of 100 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
    Okazaki N., Kikuno R., Ohara R., Inamoto S., Hara Y., Nagase T., Ohara O., Koga H.
    DNA Res. 9:179-188(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 980-2885 (ISOFORM 2).
    Tissue: Pancreatic islet.
  4. Okazaki N., Kikuno R., Nagase T., Ohara O., Koga H.
    Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: SEQUENCE REVISION.
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2207-2885 (ISOFORM 1).
    Strain: C3H/He.
    Tissue: Mesenchymal stem cell.
  6. "In vivo association of CReMM/CHD9 with promoters in osteogenic cells."
    Shur I., Socher R., Benayahu D.
    J. Cell. Physiol. 207:374-378(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.

Entry informationi

Entry nameiCHD9_MOUSE
AccessioniPrimary (citable) accession number: Q8BYH8
Secondary accession number(s): Q7TMV5
, Q8BJG8, Q8BZJ2, Q8CHG8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 2, 2006
Last sequence update: May 2, 2006
Last modified: September 3, 2014
This is version 98 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi