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Q8BYH8

- CHD9_MOUSE

UniProt

Q8BYH8 - CHD9_MOUSE

Protein

Chromodomain-helicase-DNA-binding protein 9

Gene

Chd9

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 99 (01 Oct 2014)
      Sequence version 2 (02 May 2006)
      Previous versions | rss
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    Functioni

    Acts as a transcriptional coactivator for PPARA and possibly other nuclear receptors. Proposed to be a ATP-dependent chromatin remodeling protein. Has DNA-dependent ATPase activity and binds to A/T-rich DNA By similarity. Associates with A/T-rich regulatory regions in promoters of genes that participate in the differentiation of progenitors during osteogenesis.By similarity

    Catalytic activityi

    ATP + H2O = ADP + phosphate.

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi884 – 8918ATPPROSITE-ProRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: UniProtKB-KW
    3. helicase activity Source: UniProtKB-KW

    GO - Biological processi

    1. chromatin modification Source: UniProtKB-KW
    2. regulation of transcription, DNA-templated Source: UniProtKB-KW
    3. transcription, DNA-templated Source: UniProtKB-KW

    Keywords - Molecular functioni

    Chromatin regulator, Helicase, Hydrolase

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    ATP-binding, DNA-binding, Nucleotide-binding

    Enzyme and pathway databases

    ReactomeiREACT_118837. Rora activates circadian gene expression.
    REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
    REACT_198351. RORA activates circadian gene expression.
    REACT_198352. REV-ERBA represses gene expression.
    REACT_198602. PPARA activates gene expression.
    REACT_198969. Activation of gene expression by SREBF (SREBP).
    REACT_205251. Transcriptional activation of mitochondrial biogenesis.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Chromodomain-helicase-DNA-binding protein 9 (EC:3.6.4.12)
    Short name:
    CHD-9
    Alternative name(s):
    ATP-dependent helicase CHD9
    PPAR-alpha-interacting complex protein 320 kDa
    Peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
    Gene namesi
    Name:Chd9
    Synonyms:Kiaa0308, Pric320
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 8

    Organism-specific databases

    MGIiMGI:1924001. Chd9.

    Subcellular locationi

    Cytoplasm By similarity. Nucleus By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. nucleus Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 28852885Chromodomain-helicase-DNA-binding protein 9PRO_0000233173Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei498 – 4981N6-acetyllysineBy similarity
    Modified residuei549 – 5491PhosphoserineBy similarity
    Modified residuei610 – 6101PhosphoserineBy similarity
    Modified residuei1467 – 14671PhosphoserineBy similarity
    Modified residuei1471 – 14711PhosphoserineBy similarity
    Modified residuei2025 – 20251PhosphoserineBy similarity
    Modified residuei2057 – 20571PhosphoserineBy similarity
    Modified residuei2058 – 20581PhosphoserineBy similarity

    Post-translational modificationi

    Phosphorylated on serine and tyrosine residues.By similarity

    Keywords - PTMi

    Acetylation, Phosphoprotein

    Proteomic databases

    PaxDbiQ8BYH8.
    PRIDEiQ8BYH8.

    PTM databases

    PhosphoSiteiQ8BYH8.

    Expressioni

    Tissue specificityi

    Expressed in osteoprogenitor cells during development and in mature bone (at protein level).1 Publication

    Developmental stagei

    Expressed from embryonic day 16.5 dpc in mesenchymal cartilage surrounding bone cartilage and newly formed bone trabecular spicules. Detected in bone sections of 4-day-old newborn and 3-week-old mice.1 Publication

    Gene expression databases

    ArrayExpressiQ8BYH8.
    BgeeiQ8BYH8.
    CleanExiMM_CHD9.
    GenevestigatoriQ8BYH8.

    Interactioni

    Subunit structurei

    Interacts with PPARA. Probably interacts with ESR1 and NR1I3 By similarity.By similarity

    Structurei

    3D structure databases

    ProteinModelPortaliQ8BYH8.
    SMRiQ8BYH8. Positions 714-1326, 2472-2519, 2535-2616.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini689 – 76072Chromo 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini772 – 83867Chromo 2PROSITE-ProRule annotationAdd
    BLAST
    Domaini871 – 1045175Helicase ATP-bindingPROSITE-ProRule annotationAdd
    BLAST
    Domaini1185 – 1336152Helicase C-terminalPROSITE-ProRule annotationAdd
    BLAST

    Region

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Regioni2331 – 2471141Binds A/T-rich DNABy similarityAdd
    BLAST
    Regioni2428 – 24358A.T hook-like

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi867 – 8715LXXLL motif 1
    Motifi996 – 9994DEAH box
    Motifi1035 – 10395LXXLL motif 2
    Motifi2030 – 20345LXXLL motif 3
    Motifi2710 – 27145LXXLL motif 4
    Motifi2782 – 27876LXXLL motif 5

    Sequence similaritiesi

    Belongs to the SNF2/RAD54 helicase family.Curated
    Contains 2 chromo domains.PROSITE-ProRule annotation
    Contains 1 helicase ATP-binding domain.PROSITE-ProRule annotation
    Contains 1 helicase C-terminal domain.PROSITE-ProRule annotation

    Keywords - Domaini

    Repeat

    Phylogenomic databases

    eggNOGiCOG0553.
    GeneTreeiENSGT00560000077077.
    HOGENOMiHOG000246942.
    HOVERGENiHBG081150.
    InParanoidiQ8BYH8.
    KOiK14438.
    OMAiQEDKGGT.
    OrthoDBiEOG7NSB1C.
    PhylomeDBiQ8BYH8.
    TreeFamiTF313572.

    Family and domain databases

    Gene3Di3.40.50.300. 2 hits.
    InterProiIPR006576. BRK_domain.
    IPR023780. Chromo_domain.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000330. SNF2_N.
    [Graphical view]
    PfamiPF07533. BRK. 2 hits.
    PF00385. Chromo. 2 hits.
    PF00271. Helicase_C. 1 hit.
    PF00176. SNF2_N. 1 hit.
    [Graphical view]
    SMARTiSM00592. BRK. 2 hits.
    SM00298. CHROMO. 2 hits.
    SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view]
    SUPFAMiSSF52540. SSF52540. 2 hits.
    SSF54160. SSF54160. 2 hits.
    PROSITEiPS50013. CHROMO_2. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    [Graphical view]

    Sequences (2)i

    Sequence statusi: Complete.

    This entry describes 2 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q8BYH8-1) [UniParc]FASTAAdd to Basket

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MTDPMMDFFD DANLFGETLE GLSDDTFVQP GPVSLVDELN LGAEFEPLHI     50
    DSLNHVQGTP THQKMADFEQ LSQFDSMKFH PVNQSFGSPV EHVLSPHSQF 100
    NCSPIHPPNQ PNGLFQDVAD GSPMWGHQTA TGLANQNGSP FHQPGHSHSL 150
    HQNKSFVAHP DFALFQASEH QTQCSSLHSQ QSRSNLNPGQ NSLGQAKNFL 200
    DANVSGAHRV NVNHLATAPS SQQTLPVQFS PTANPPAHFL KCSSHQEGNY 250
    NRPSPSMTSC SVSNSQQFPS HYSFSSGHVS PSSLLQSSAG LAPGHTNQAL 300
    SDFAGSNSFS PHRGMKQEPT QHLLNPTPSL NSNNFQILHS SHPQGNYSNS 350
    KLSPVHMNFP DPVDAGPPVG HFNDHAETNG FSSLEENLLH HVDSHAEPFA 400
    GLDPEDLLQE GLLPQFDESP FGQDNSNHVL DHDLDRQFTS HLVSRPSDMA 450
    QTQLQYQARG WPSPLSTNHQ HLHSRNHLCL QRQPPSSKKS DGSGTYTKLQ 500
    NTQVRVMSEK KPRKRVESES KQEKANRIIS EAIARAKERG ERNIPRVMSP 550
    ENFPSASVEG KEEKRGRRMK SKPKDRDNKK PKTYSKLKEK TKIGKLIITL 600
    GKKHKRRNES SDELSDAEQR SQHTFKEQHS QKRRSNRQIK RKKYAEDAEG 650
    KQSEEEVKGS LRVKRNSAPP PGEQPLQLFV ENPSEEDAAI VDKILACRTV 700
    KKEVSPGVML DIEEFFVKYK NYSYLHCEWA TEQQLLKDKR IQQKIKRFKL 750
    RQAQRAHFLA DMEEEPFNPD YVEVDRILEV SFCEDKDTGE SVIYYLVKWC 800
    SLPYEDSTWE LKEDVDLAKI EEFEQLQASR PDTRHLDRPP SNIWKKIEQS 850
    REYKNGNQLR EYQLEGLNWL LFNWYNRRNC ILADEMGLGK TIQSITFLYE 900
    ILLTGIRGPF LIIAPLSTIA NWEREFRTWT DINVVVYHGS LISRQMIQQY 950
    EMYFRDSQGR IIRGAYRFQA IITTFEMILG GCGELNAIDW RCVIIDEAHR 1000
    LKNKNCKLLE GLKLMNLEHK VLLTGTPLQN TVEELFSLLH FLEPLRFPSE 1050
    STFMQEFGDL KTEEQVQKLQ AILKPMMLRR LKEDVEKKLA PKEETIIEVE 1100
    LTNIQKKYYR AILEKNFSFL SKGAGQTNVP NLVNTMMELR KCCNHPYLIK 1150
    GAEEKILGEF RDTYNPSASD FHLQAMIQSA GKLVLIDKLL PKMKAGGHKV 1200
    LIFSQMVRCL DILEDYLIHK RYLYERIDGR VRGNLRQAAI DRFSKPDSDR 1250
    FVFLLCTRAG GLGINLTAAD TCIIFDSDWN PQNDLQAQAR CHRIGQNKAV 1300
    KVYRLVTRNS YEREMFDRAS LKLGLDKAVL QSMSGRDSNV SGIQQLSKKE 1350
    IEDLLRRGAY GAIMEEEDEG SKFCEEDIDQ ILLRRTKTIT IESEGRGSTF 1400
    AKASFVASGN RTDISLDDPN FWQKWAKKAE LDIDTISGRN SLVIDTPRIR 1450
    KQTRPFSATK DELAELSEAE SEGEEKPKLR RPCDRSGGYG RTECFRVEKN 1500
    LLVYGWGRWR EILSHGRFKR QLNEHDVEVI CRALLAYCLI HYRGDEKIKG 1550
    FIWDLITPTE DGQTRELQNH LGLSAPVPRG RKGKKVKTQT SSFDIQKAEW 1600
    LRKYNPEQLL QDEGYKKHVK HHCNKVLLRV RMLYYLKQEV IGNESQKVFD 1650
    GVDASDIDVW VPEPDHSEVP AAWWDFDADK SLLIGVFKHG YEKYNTIRAD 1700
    PALCFLERVG KPDDKAVAAE QRANDYMDGD VEDPEYKPAP AIFKDDIEDD 1750
    VSSPGDLVIA DGEGQLMEGD KVYWPTPSAL TTRLRRLITA YQRTNKNRHI 1800
    QQMQPTFSLP ANAMQPLYEE ATLNPKMAAK IERQQRWTRR EEADFYRVVS 1850
    TFGVVFDPDR GQFDWTKFRA LARLHKKTDN SLEKYLCAFM SMCRRVCRLP 1900
    SKEELVDPNI FIQPITEERA SRTLYRIELL RKVREQALRH PQLFERLKLC 1950
    HPNPDLPIWW ECGSHDRDLL IGAAKHGVSR TDYHILRDPE LSFMAAQRNY 2000
    NQSKAAHSRT SAPLLQQYQV ALSASPLTSL PRLLGAKGTL LEDMKVKSES 2050
    LTEEPQSSEE ESMSSMETRT RVKSEPVSPK NGVLSQATGD QKSGGKSETD 2100
    RRMVAARTEP LTPNPASKKP RVHKRGSQSS SDSDSDSARS SCSSRSSSSS 2150
    SSSSSCSHSR SGSSSSSSSS CSSASSSSSS SSSSSSSSSS SSSEESDSEE 2200
    DVQKREGTPH RKAYDEESVA SLSTTQDETQ DSFQANNGTP ESAYLLQGGY 2250
    MLAASYWPKD RVMINRLDSI CQTVLKGKWP SARRHYDANT VASFYTTKLL 2300
    DSPGAATERG EPSVPTPPAV AVREEHEQSA QMSKVKKHVR EKEFTVKIKD 2350
    EGGLKLTFQK QGLAQKRPFD GEDGALGQQQ YLTRLRELQS TSETSLVNLP 2400
    KAVPASGTSI QPTLGANGAI LDSQPIVKKR RGRRRNVEGA DILFLNRNKP 2450
    PNHIPTGMNP ALSYPQPQRI PDTESPVPVI NLKDGTRLAG DDAPKRKDLD 2500
    RWLKEHPGYV EDLGAFIPRV QLHEGRPKQK RHRCRNPNKL DINSLTGEER 2550
    VQLINRRNAR KVGGAFAPPL KDLCRFLKEN SEYGVAPEWG DVVKQSGFLP 2600
    ESMFERILTG PVVREEVSRR GRRPKSGIAK ATTAAAVPAG SVPGNPLLAN 2650
    GLLPGVDLTA LQALQQNLQN LQSLQVTAGL MGMPAGLSSG GETKNMAAMF 2700
    PMLFSGMAGL PNLLGMGGLL SKTAESGAEE KRGNDSKELE GKKERTESQS 2750
    PENGGERCVP GSPSTSSTAA LSSAAAAKPI ALNPLLLSNI LYPGMLLTPG 2800
    LNLHLPTLSQ SNAFDVQKNK SDDLDSSKSV EIKEENSRVR DQEEKGGTEP 2850
    SPLNENSTDE GSERASSGSD SSSSSSEDSD SSNED 2885
    Length:2,885
    Mass (Da):323,860
    Last modified:May 2, 2006 - v2
    Checksum:iB820BE8EA9CC2915
    GO
    Isoform 2 (identifier: Q8BYH8-2) [UniParc]FASTAAdd to Basket

    The sequence of this isoform differs from the canonical sequence as follows:
         2335-2350: Missing.

    Show »
    Length:2,869
    Mass (Da):321,894
    Checksum:iA684A06A35C83F91
    GO

    Sequence cautioni

    The sequence AAH52896.1 differs from that shown. Reason: Erroneous initiation.

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti101 – 1011N → I in BAC39090. (PubMed:16141072)Curated
    Sequence conflicti584 – 5841Y → D in BAC28711. (PubMed:16141072)Curated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei2335 – 235016Missing in isoform 2. 2 PublicationsVSP_018087Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DQ127229 mRNA. Translation: AAZ73184.2.
    AK034446 mRNA. Translation: BAC28711.1.
    AK039562 mRNA. Translation: BAC30385.1.
    AK084000 mRNA. Translation: BAC39090.1.
    AB093226 mRNA. Translation: BAC41410.3.
    BC052896 mRNA. Translation: AAH52896.1. Different initiation.
    CCDSiCCDS22517.1. [Q8BYH8-2]
    RefSeqiNP_796198.1. NM_177224.2. [Q8BYH8-2]
    XP_006530631.1. XM_006530568.1. [Q8BYH8-1]
    XP_006530632.1. XM_006530569.1. [Q8BYH8-1]
    UniGeneiMm.100615.

    Genome annotation databases

    EnsembliENSMUST00000048665; ENSMUSP00000046356; ENSMUSG00000056608. [Q8BYH8-2]
    ENSMUST00000109614; ENSMUSP00000105243; ENSMUSG00000056608. [Q8BYH8-1]
    GeneIDi109151.
    KEGGimmu:109151.
    UCSCiuc009msf.2. mouse. [Q8BYH8-2]
    uc009msi.2. mouse. [Q8BYH8-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    DQ127229 mRNA. Translation: AAZ73184.2 .
    AK034446 mRNA. Translation: BAC28711.1 .
    AK039562 mRNA. Translation: BAC30385.1 .
    AK084000 mRNA. Translation: BAC39090.1 .
    AB093226 mRNA. Translation: BAC41410.3 .
    BC052896 mRNA. Translation: AAH52896.1 . Different initiation.
    CCDSi CCDS22517.1. [Q8BYH8-2 ]
    RefSeqi NP_796198.1. NM_177224.2. [Q8BYH8-2 ]
    XP_006530631.1. XM_006530568.1. [Q8BYH8-1 ]
    XP_006530632.1. XM_006530569.1. [Q8BYH8-1 ]
    UniGenei Mm.100615.

    3D structure databases

    ProteinModelPortali Q8BYH8.
    SMRi Q8BYH8. Positions 714-1326, 2472-2519, 2535-2616.
    ModBasei Search...
    MobiDBi Search...

    PTM databases

    PhosphoSitei Q8BYH8.

    Proteomic databases

    PaxDbi Q8BYH8.
    PRIDEi Q8BYH8.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000048665 ; ENSMUSP00000046356 ; ENSMUSG00000056608 . [Q8BYH8-2 ]
    ENSMUST00000109614 ; ENSMUSP00000105243 ; ENSMUSG00000056608 . [Q8BYH8-1 ]
    GeneIDi 109151.
    KEGGi mmu:109151.
    UCSCi uc009msf.2. mouse. [Q8BYH8-2 ]
    uc009msi.2. mouse. [Q8BYH8-1 ]

    Organism-specific databases

    CTDi 80205.
    MGIi MGI:1924001. Chd9.
    Rougei Search...

    Phylogenomic databases

    eggNOGi COG0553.
    GeneTreei ENSGT00560000077077.
    HOGENOMi HOG000246942.
    HOVERGENi HBG081150.
    InParanoidi Q8BYH8.
    KOi K14438.
    OMAi QEDKGGT.
    OrthoDBi EOG7NSB1C.
    PhylomeDBi Q8BYH8.
    TreeFami TF313572.

    Enzyme and pathway databases

    Reactomei REACT_118837. Rora activates circadian gene expression.
    REACT_196516. YAP1- and WWTR1 (TAZ)-stimulated gene expression.
    REACT_198351. RORA activates circadian gene expression.
    REACT_198352. REV-ERBA represses gene expression.
    REACT_198602. PPARA activates gene expression.
    REACT_198969. Activation of gene expression by SREBF (SREBP).
    REACT_205251. Transcriptional activation of mitochondrial biogenesis.

    Miscellaneous databases

    ChiTaRSi CHD9. mouse.
    NextBioi 361700.
    PROi Q8BYH8.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q8BYH8.
    Bgeei Q8BYH8.
    CleanExi MM_CHD9.
    Genevestigatori Q8BYH8.

    Family and domain databases

    Gene3Di 3.40.50.300. 2 hits.
    InterProi IPR006576. BRK_domain.
    IPR023780. Chromo_domain.
    IPR000953. Chromo_domain/shadow.
    IPR016197. Chromodomain-like.
    IPR014001. Helicase_ATP-bd.
    IPR001650. Helicase_C.
    IPR027417. P-loop_NTPase.
    IPR000330. SNF2_N.
    [Graphical view ]
    Pfami PF07533. BRK. 2 hits.
    PF00385. Chromo. 2 hits.
    PF00271. Helicase_C. 1 hit.
    PF00176. SNF2_N. 1 hit.
    [Graphical view ]
    SMARTi SM00592. BRK. 2 hits.
    SM00298. CHROMO. 2 hits.
    SM00487. DEXDc. 1 hit.
    SM00490. HELICc. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52540. SSF52540. 2 hits.
    SSF54160. SSF54160. 2 hits.
    PROSITEi PS50013. CHROMO_2. 1 hit.
    PS51192. HELICASE_ATP_BIND_1. 1 hit.
    PS51194. HELICASE_CTER. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "PRIC320, a transcription coactivator, isolated from peroxisome proliferator-binding protein complex."
      Surapureddi S., Viswakarma N., Yu S., Guo D., Rao M.S., Reddy J.K.
      Biochem. Biophys. Res. Commun. 343:535-543(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 2).
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1-1104 (ISOFORMS 1/2).
      Strain: C57BL/6J.
      Tissue: Diencephalon, Spinal cord and Spinal ganglion.
    3. "Prediction of the coding sequences of mouse homologues of KIAA gene: I. The complete nucleotide sequences of 100 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries."
      Okazaki N., Kikuno R., Ohara R., Inamoto S., Hara Y., Nagase T., Ohara O., Koga H.
      DNA Res. 9:179-188(2002) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 980-2885 (ISOFORM 2).
      Tissue: Pancreatic islet.
    4. Okazaki N., Kikuno R., Nagase T., Ohara O., Koga H.
      Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: SEQUENCE REVISION.
    5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 2207-2885 (ISOFORM 1).
      Strain: C3H/He.
      Tissue: Mesenchymal stem cell.
    6. "In vivo association of CReMM/CHD9 with promoters in osteogenic cells."
      Shur I., Socher R., Benayahu D.
      J. Cell. Physiol. 207:374-378(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: TISSUE SPECIFICITY, DEVELOPMENTAL STAGE.

    Entry informationi

    Entry nameiCHD9_MOUSE
    AccessioniPrimary (citable) accession number: Q8BYH8
    Secondary accession number(s): Q7TMV5
    , Q8BJG8, Q8BZJ2, Q8CHG8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 2, 2006
    Last sequence update: May 2, 2006
    Last modified: October 1, 2014
    This is version 99 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3