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Protein
Submitted name:

Putative uncharacterized protein

Gene

Tnrc6b

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Tnrc6bImported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:2443730. Tnrc6b.

PTM / Processingi

Proteomic databases

PaxDbiQ8BX83.
PRIDEiQ8BX83.

Expressioni

Gene expression databases

BgeeiQ8BX83.
GenevisibleiQ8BX83. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili35 – 7440Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG102727.
KOiK18412.

Sequencei

Sequence statusi: Fragment.

Q8BX83-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQTNEGEVEE ESSSQVEQED FVMEGHGKTP PPGEESKQEK EQEREEQLME
60 70 80 90 100
DKKRKKEDKK KKEATQKVTE QKTKVPEVTK PSLSQPTAAS PIGSSPSPPV
110 120 130 140 150
NGGNNAKRVA VPNGQPPSAA RYMPREVPPR FRCQQDHKVL LKRGQPPPPS
160 170 180 190 200
CMLLGGGAGP PPCTAPGANP NNNAQVTGAL LQSESGTAPE STLGGAAASN
210 220 230 240 250
YANSTWGPGA SSNSGASPNP IHIWDKVIVD GSDMEEWPCI ASKDTESSSE
260 270 280 290 300
NTTDNNSASN PGSEKSSLPG STTSNKGKGS QCQAASSGNE CNLGVWKSDP
310 320 330 340 350
KAKSVQPPNS TSDSNNGLGN WRSTSGQDRI GPGSGFSNFN PNSNPSAWPA
360 370 380 390 400
LVQEGTSRKG ALETESSSSS AQVSTVGQAS REQQSKMENA GVNFVVSGRE
410
QAQIHNTDGP
Length:410
Mass (Da):43,003
Last modified:October 11, 2005 - v2
Checksum:iC5A037D38327626A
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei410 – 4101Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK048628 mRNA. Translation: BAC33400.2.
RefSeqiNP_659061.2. NM_144812.2.
UniGeneiMm.131328.
Mm.412092.

Genome annotation databases

GeneIDi213988.
KEGGimmu:213988.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK048628 mRNA. Translation: BAC33400.2.
RefSeqiNP_659061.2. NM_144812.2.
UniGeneiMm.131328.
Mm.412092.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000064336.

Proteomic databases

PaxDbiQ8BX83.
PRIDEiQ8BX83.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi213988.
KEGGimmu:213988.

Organism-specific databases

CTDi23112.
MGIiMGI:2443730. Tnrc6b.

Phylogenomic databases

eggNOGiENOG410IET2. Eukaryota.
ENOG410YDKH. LUCA.
HOVERGENiHBG102727.
KOiK18412.

Miscellaneous databases

ChiTaRSiTnrc6b. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BX83.
GenevisibleiQ8BX83. MM.

Family and domain databases

ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: HeadImported.

Entry informationi

Entry nameiQ8BX83_MOUSE
AccessioniPrimary (citable) accession number: Q8BX83
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: October 11, 2005
Last modified: June 8, 2016
This is version 80 of the entry and version 2 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.