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Q8BX22

- SALL4_MOUSE

UniProt

Q8BX22 - SALL4_MOUSE

Protein

Sal-like protein 4

Gene

Sall4

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 5 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 108 (01 Oct 2014)
      Sequence version 2 (27 Jul 2011)
      Previous versions | rss
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    Functioni

    Transcription factor with a key role in the maintenance and self-renewal of embryonic and hematopoietic stem cells.By similarity

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri387 – 40923C2H2-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri415 – 43723C2H2-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri573 – 59523C2H2-type 3PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri601 – 62323C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri633 – 65523C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri880 – 90223C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri908 – 93023C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST

    GO - Molecular functioni

    1. DNA binding Source: UniProtKB-KW
    2. metal ion binding Source: UniProtKB-KW
    3. protein binding Source: IntAct

    GO - Biological processi

    1. embryonic limb morphogenesis Source: MGI
    2. heart development Source: MGI
    3. inner cell mass cell proliferation Source: MGI
    4. in utero embryonic development Source: MGI
    5. negative regulation of transcription from RNA polymerase II promoter Source: MGI
    6. neural tube closure Source: MGI
    7. neural tube development Source: MGI
    8. positive regulation of transcription from RNA polymerase II promoter Source: MGI
    9. stem cell maintenance Source: MGI
    10. tissue development Source: MGI
    11. transcription, DNA-templated Source: UniProtKB-KW
    12. ventricular septum development Source: MGI

    Keywords - Biological processi

    Transcription, Transcription regulation

    Keywords - Ligandi

    DNA-binding, Metal-binding, Zinc

    Enzyme and pathway databases

    ReactomeiREACT_216222. Transcriptional regulation of pluripotent stem cells.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Sal-like protein 4
    Alternative name(s):
    Zinc finger protein SALL4
    Gene namesi
    Name:Sall4
    OrganismiMus musculus (Mouse)
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 2

    Organism-specific databases

    MGIiMGI:2139360. Sall4.

    Subcellular locationi

    Cytoplasm By similarity. Nucleus By similarity

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell
    2. heterochromatin Source: MGI
    3. nucleus Source: MGI
    4. protein complex Source: MGI
    5. transcription factor complex Source: MGI

    Keywords - Cellular componenti

    Cytoplasm, Nucleus

    Pathology & Biotechi

    Keywords - Diseasei

    Oncogene

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 10671067Sal-like protein 4PRO_0000261416Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei53 – 531PhosphoserineBy similarity
    Cross-linki151 – 151Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1)By similarity
    Modified residuei308 – 3081PhosphoserineBy similarity
    Cross-linki317 – 317Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1)By similarity
    Cross-linki379 – 379Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1)By similarity
    Modified residuei755 – 7551PhosphoserineBy similarity
    Modified residuei785 – 7851PhosphoserineBy similarity
    Modified residuei798 – 7981PhosphoserineBy similarity
    Cross-linki846 – 846Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO-1)By similarity
    Modified residuei1029 – 10291PhosphoserineBy similarity

    Post-translational modificationi

    Sumoylation with both SUMO1 and SUMO2 regulates the stability, subcellular localization, transcriptional activity, and may reduce interaction with POU5F1/OCT4.By similarity

    Keywords - PTMi

    Isopeptide bond, Phosphoprotein, Ubl conjugation

    Proteomic databases

    PRIDEiQ8BX22.

    PTM databases

    PhosphoSiteiQ8BX22.

    Expressioni

    Gene expression databases

    BgeeiQ8BX22.
    CleanExiMM_SALL4.
    GenevestigatoriQ8BX22.

    Interactioni

    Subunit structurei

    Interacts with POU5F1/OCT4 By similarity. Interacts with NANOG.By similarity1 Publication

    Binary interactionsi

    WithEntry#Exp.IntActNotes
    Mta2Q9R1903EBI-2312582,EBI-904134
    Nacc1Q7TSZ84EBI-2312582,EBI-5691985
    NRBP1Q9UHY12EBI-2312582,EBI-749731From a different organism.
    Znf143O702302EBI-2312582,EBI-5691478

    Protein-protein interaction databases

    BioGridi221236. 55 interactions.
    DIPiDIP-29926N.
    IntActiQ8BX22. 43 interactions.
    MINTiMINT-8394991.

    Structurei

    3D structure databases

    ProteinModelPortaliQ8BX22.
    SMRiQ8BX22. Positions 389-467, 572-685, 869-930.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Compositional bias

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Compositional biasi217 – 2259Poly-Gln

    Sequence similaritiesi

    Contains 7 C2H2-type zinc fingers.PROSITE-ProRule annotation

    Zinc finger

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Zinc fingeri387 – 40923C2H2-type 1PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri415 – 43723C2H2-type 2PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri573 – 59523C2H2-type 3PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri601 – 62323C2H2-type 4PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri633 – 65523C2H2-type 5PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri880 – 90223C2H2-type 6PROSITE-ProRule annotationAdd
    BLAST
    Zinc fingeri908 – 93023C2H2-type 7PROSITE-ProRule annotationAdd
    BLAST

    Keywords - Domaini

    Repeat, Zinc-finger

    Phylogenomic databases

    eggNOGiCOG5048.
    GeneTreeiENSGT00550000074555.
    HOGENOMiHOG000231986.
    HOVERGENiHBG058921.
    InParanoidiA2AV00.
    OMAiPHANIPS.
    OrthoDBiEOG7NCV2P.
    TreeFamiTF317003.

    Family and domain databases

    Gene3Di3.30.160.60. 7 hits.
    InterProiIPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF00096. zf-C2H2. 1 hit.
    [Graphical view]
    SMARTiSM00355. ZnF_C2H2. 8 hits.
    [Graphical view]
    PROSITEiPS00028. ZINC_FINGER_C2H2_1. 7 hits.
    PS50157. ZINC_FINGER_C2H2_2. 7 hits.
    [Graphical view]

    Sequences (3)i

    Sequence statusi: Complete.

    This entry describes 3 isoformsi produced by alternative splicing. Align

    Isoform 1 (identifier: Q8BX22-1) [UniParc]FASTAAdd to Basket

    Also known as: Sall4a

    This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

    « Hide

    MSRRKQAKPQ HINWEEGQGE QPQQLPSPDL AEALAAEEPG APVNSPGNCD     50
    EASEDSIPVK RPRREDTHIC NKCCAEFFSL SEFMEHKKSC TKTPPVLIMN 100
    DSEGPVPSED FSRAALSHQL GSPSNKDSLQ ENGSSSGDLK KLGTDSILYL 150
    KTEATQPSTP QDISYLPKGK VANTNVTLQA LRGTKVAVNQ RGAEAPMAPM 200
    PAAQGIPWVL EQILCLQQQQ LQQIQLTEQI RVQVNMWAAH ALHSGVAGAD 250
    TLKALSSHVS QQVSVSQQVS AAVALLSQKA SNPALSLDAL KQAKLPHASV 300
    PSAASPLSSG LTSFTLKPDG TRVLPNFVSR LPSALLPQTP GSVLLQSPFS 350
    AVTLDQSKKG KGKPQNLSAS ASVLDVKAKD EVVLGKHKCR YCPKVFGTDS 400
    SLQIHLRSHT GERPYVCPIC GHRFTTKGNL KVHLQRHPEV KANPQLLAEF 450
    QDKGAVSAAS HYALPVPVPA DESSLSVDAE PVPVTGTPSL GLPQKLTSGP 500
    NSRDLMGGSL PNDMQPGPSP ESEAGLPLLG VGMIHNPPKA GGFQGTGAPE 550
    SGSETLKLQQ LVENIDKATT DPNECLICHR VLSCQSSLKM HYRTHTGERP 600
    FQCKICGRAF STKGNLKTHL GVHRTNTTVK TQHSCPICQK KFTNAVMLQQ 650
    HIRMHMGGQI PNTPLPESPC DFTAPEPVAV SENGSASGVC QDDAAEGMEA 700
    EEVCSQDVPS GPSTVSLPVP SAHLASPSLG FSVLASLDTQ GKGALPALAL 750
    QRQSSRENSS LEGGDTGPAN DSSLLVGDQE CQSRSPDATE TMCYQAVSPA 800
    NSQAGSVKSR SPEGHKAEGV ESCRVDTEGR TSLPPTFIRA QPTFVKVEVP 850
    GTFVGPPSMP SGMPPLLASQ PQPRRQAKQH CCTRCGKNFS SASALQIHER 900
    THTGEKPFVC NICGRAFTTK GNLKVHYMTH GANNNSARRG RKLAIENPMA 950
    ALSAEGKRAP EVFSKELLSP AVSVDPASWN QYTSVLNGGL AMKTNEISVI 1000
    QSGGIPTLPV SLGASSVVSN GTISKLDGSQ TGVSMPMSGN GEKLAVPDGM 1050
    AKHQFPHFLE ENKIAVS 1067
    Length:1,067
    Mass (Da):113,110
    Last modified:July 27, 2011 - v2
    Checksum:i23B92F488AAF53E5
    GO
    Isoform 2 (identifier: Q8BX22-2) [UniParc]FASTAAdd to Basket

    Also known as: Sall4b

    The sequence of this isoform differs from the canonical sequence as follows:
         386-829: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:623
    Mass (Da):66,215
    Checksum:i8C762461A0483EF7
    GO
    Isoform 3 (identifier: Q8BX22-3) [UniParc]FASTAAdd to Basket

    Also known as: Sall4c

    The sequence of this isoform differs from the canonical sequence as follows:
         40-828: Missing.

    Note: No experimental confirmation available.

    Show »
    Length:278
    Mass (Da):29,725
    Checksum:iD8DCBBFE0618EF02
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti865 – 8651P → H in AAR91797. 1 PublicationCurated
    Sequence conflicti950 – 9501A → V in AAR91797. 1 PublicationCurated
    Sequence conflicti950 – 9501A → V in CAD32912. 1 PublicationCurated
    Sequence conflicti969 – 9691S → Y in AAR91796. 1 PublicationCurated
    Sequence conflicti969 – 9691S → Y in AAR91798. 1 PublicationCurated
    Sequence conflicti969 – 9691S → Y in BAC33598. (PubMed:16141072)Curated
    Sequence conflicti997 – 9971I → T in AAR91797. 1 PublicationCurated
    Sequence conflicti1022 – 10221T → M in AAR91797. 1 PublicationCurated

    Alternative sequence

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Alternative sequencei40 – 828789Missing in isoform 3. 1 PublicationVSP_021686Add
    BLAST
    Alternative sequencei386 – 829444Missing in isoform 2. 1 PublicationVSP_021687Add
    BLAST

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY463371 mRNA. Translation: AAR91796.1.
    AY463372 mRNA. Translation: AAR91797.1.
    AY463373 mRNA. Translation: AAR91798.1.
    AK049188 mRNA. Translation: BAC33598.1.
    AL929248 Genomic DNA. Translation: CAM21964.1.
    CH466551 Genomic DNA. Translation: EDL06559.1.
    AJ488904 Genomic DNA. Translation: CAD32912.1.
    CCDSiCCDS17115.1. [Q8BX22-1]
    CCDS17116.1. [Q8BX22-2]
    CCDS17117.1. [Q8BX22-3]
    RefSeqiNP_780512.2. NM_175303.3. [Q8BX22-1]
    NP_958797.2. NM_201395.2. [Q8BX22-2]
    NP_958798.2. NM_201396.2. [Q8BX22-3]
    UniGeneiMm.434054.
    Mm.491245.

    Genome annotation databases

    EnsembliENSMUST00000029061; ENSMUSP00000029061; ENSMUSG00000027547. [Q8BX22-1]
    ENSMUST00000075044; ENSMUSP00000074556; ENSMUSG00000027547. [Q8BX22-3]
    ENSMUST00000103074; ENSMUSP00000099363; ENSMUSG00000027547. [Q8BX22-2]
    GeneIDi99377.
    KEGGimmu:99377.
    UCSCiuc008obf.1. mouse. [Q8BX22-1]

    Keywords - Coding sequence diversityi

    Alternative splicing

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AY463371 mRNA. Translation: AAR91796.1 .
    AY463372 mRNA. Translation: AAR91797.1 .
    AY463373 mRNA. Translation: AAR91798.1 .
    AK049188 mRNA. Translation: BAC33598.1 .
    AL929248 Genomic DNA. Translation: CAM21964.1 .
    CH466551 Genomic DNA. Translation: EDL06559.1 .
    AJ488904 Genomic DNA. Translation: CAD32912.1 .
    CCDSi CCDS17115.1. [Q8BX22-1 ]
    CCDS17116.1. [Q8BX22-2 ]
    CCDS17117.1. [Q8BX22-3 ]
    RefSeqi NP_780512.2. NM_175303.3. [Q8BX22-1 ]
    NP_958797.2. NM_201395.2. [Q8BX22-2 ]
    NP_958798.2. NM_201396.2. [Q8BX22-3 ]
    UniGenei Mm.434054.
    Mm.491245.

    3D structure databases

    ProteinModelPortali Q8BX22.
    SMRi Q8BX22. Positions 389-467, 572-685, 869-930.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    BioGridi 221236. 55 interactions.
    DIPi DIP-29926N.
    IntActi Q8BX22. 43 interactions.
    MINTi MINT-8394991.

    PTM databases

    PhosphoSitei Q8BX22.

    Proteomic databases

    PRIDEi Q8BX22.

    Protocols and materials databases

    DNASUi 99377.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000029061 ; ENSMUSP00000029061 ; ENSMUSG00000027547 . [Q8BX22-1 ]
    ENSMUST00000075044 ; ENSMUSP00000074556 ; ENSMUSG00000027547 . [Q8BX22-3 ]
    ENSMUST00000103074 ; ENSMUSP00000099363 ; ENSMUSG00000027547 . [Q8BX22-2 ]
    GeneIDi 99377.
    KEGGi mmu:99377.
    UCSCi uc008obf.1. mouse. [Q8BX22-1 ]

    Organism-specific databases

    CTDi 57167.
    MGIi MGI:2139360. Sall4.

    Phylogenomic databases

    eggNOGi COG5048.
    GeneTreei ENSGT00550000074555.
    HOGENOMi HOG000231986.
    HOVERGENi HBG058921.
    InParanoidi A2AV00.
    OMAi PHANIPS.
    OrthoDBi EOG7NCV2P.
    TreeFami TF317003.

    Enzyme and pathway databases

    Reactomei REACT_216222. Transcriptional regulation of pluripotent stem cells.

    Miscellaneous databases

    NextBioi 353905.
    PROi Q8BX22.
    SOURCEi Search...

    Gene expression databases

    Bgeei Q8BX22.
    CleanExi MM_SALL4.
    Genevestigatori Q8BX22.

    Family and domain databases

    Gene3Di 3.30.160.60. 7 hits.
    InterProi IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF00096. zf-C2H2. 1 hit.
    [Graphical view ]
    SMARTi SM00355. ZnF_C2H2. 8 hits.
    [Graphical view ]
    PROSITEi PS00028. ZINC_FINGER_C2H2_1. 7 hits.
    PS50157. ZINC_FINGER_C2H2_2. 7 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Characterization of the murine Okihiro syndrome gene (Sall4): sequence, expression and alternative splicing."
      Ma Y., Di C., Kang Q., Lai R., Theus J., Chai L.
      Submitted (NOV-2003) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS 1; 2 AND 3).
    2. "The transcriptional landscape of the mammalian genome."
      Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
      , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
      Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
      Strain: C57BL/6J.
    3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6J.
    4. Mural R.J., Adams M.D., Myers E.W., Smith H.O., Venter J.C.
      Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    5. "Cloning and expression of Sall4."
      Kohlhase J., Kispert A., Heinrich M.
      Submitted (MAY-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [GENOMIC DNA] OF 324-958.
      Strain: 129/Sv.
    6. "Sall4 interacts with Nanog and co-occupies Nanog genomic sites in embryonic stem cells."
      Wu Q., Chen X., Zhang J., Loh Y.-H., Low T.-Y., Zhang W., Zhang W., Sze S.-K., Lim B., Ng H.-H.
      J. Biol. Chem. 281:24090-24094(2006) [PubMed] [Europe PMC] [Abstract]
      Cited for: INTERACTION WITH NANOG.

    Entry informationi

    Entry nameiSALL4_MOUSE
    AccessioniPrimary (citable) accession number: Q8BX22
    Secondary accession number(s): A2AV00
    , Q6S7E8, Q6S7E9, Q7TST6
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 28, 2006
    Last sequence update: July 27, 2011
    Last modified: October 1, 2014
    This is version 108 of the entry and version 2 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programChordata Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. MGD cross-references
      Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3