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Protein

Transcription termination factor 4, mitochondrial

Gene

Mterf4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Regulator of mitochondrial ribosome biogenesis and translation. Binds to mitochondrial ribosomal RNAs 16S, 12S and 7S (By similarity). Targets NSUN4 RNA methyltransferase to the mitochondrial large ribosomal subunit.By similarity1 Publication

GO - Molecular functioni

GO - Biological processi

  • camera-type eye development Source: MGI
  • heart development Source: MGI
  • protein targeting to mitochondrion Source: MGI
  • regulation of transcription, DNA-templated Source: InterPro
  • ribosome assembly Source: MGI
  • rRNA processing Source: UniProtKB-KW
  • transcription from mitochondrial promoter Source: MGI
Complete GO annotation...

Keywords - Biological processi

rRNA processing

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Transcription termination factor 4, mitochondrial
Alternative name(s):
Mitochondrial transcription termination factor 4
Short name:
MTERF4
mTERF domain-containing protein 2
Gene namesi
Name:Mterf4
Synonyms:Mterfd2
Ordered Locus Names:HSPC096
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 1

Organism-specific databases

MGIiMGI:1918355. Mterf4.

Subcellular locationi

GO - Cellular componenti

  • cytoplasm Source: MGI
  • mitochondrial large ribosomal subunit Source: MGI
  • mitochondrion Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Mitochondrion

Pathology & Biotechi

Disruption phenotypei

Ablation of the gene is not viable. At 8.5 dpc, mutant homozygous embryos exhibit much reduced size, lack of heart and no optic disks. Conditional knockout in heart leads to severe mitochondrial cardiomyopathy. Premature death occurs at about 21 weeks and decreased body weight is observed from 15 weeks until death.1 Publication

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transit peptidei1 – 4242MitochondrionBy similarityAdd
BLAST
Chaini43 – 346304Transcription termination factor 4, mitochondrialPRO_0000255462Add
BLAST

Proteomic databases

MaxQBiQ8BVN4.
PaxDbiQ8BVN4.
PRIDEiQ8BVN4.

PTM databases

PhosphoSiteiQ8BVN4.

Expressioni

Tissue specificityi

Widely expressed, with highest levels in liver, followed by testis, kidney and brain.1 Publication

Gene expression databases

BgeeiQ8BVN4.
CleanExiMM_MTERFD2.
ExpressionAtlasiQ8BVN4. baseline and differential.
GenevisibleiQ8BVN4. MM.

Interactioni

Subunit structurei

Heterodimer with NSUN4; this interaction may be required for NSUN4 recruitment to the mitochondrial large ribosomal subunit.By similarity

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000027492.

Structurei

3D structure databases

ProteinModelPortaliQ8BVN4.
SMRiQ8BVN4. Positions 89-326.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati142 – 17231MTERF 1Add
BLAST
Repeati177 – 20428MTERF 2Add
BLAST
Repeati209 – 23931MTERF 3Add
BLAST
Repeati245 – 27026MTERF 4Add
BLAST
Repeati290 – 31829MTERF 5Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni310 – 32718Dimerization with NSUN4By similarityAdd
BLAST

Domaini

The MTERF repeats form a half-donut shaped, right-handed superhelix, where the concave side displays a positively charged path for nucleic acid interaction.By similarity

Sequence similaritiesi

Belongs to the mTERF family.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

eggNOGiNOG44738.
GeneTreeiENSGT00460000041648.
HOGENOMiHOG000069984.
HOVERGENiHBG081990.
InParanoidiQ8BVN4.
KOiK15032.
OMAiTEILHRC.
PhylomeDBiQ8BVN4.
TreeFamiTF329452.

Family and domain databases

InterProiIPR003690. MTERF.
[Graphical view]
PfamiPF02536. mTERF. 1 hit.
[Graphical view]
SMARTiSM00733. Mterf. 4 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8BVN4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASLGRQVPE WHRLLALSWA CLVRQTPHLR EQKQMSPSLS CKLTTVPGRG
60 70 80 90 100
SFQEFSSITP QKYMQEPENR TRLVQCLHEE QKPCVDPESL EPEKVIRSLQ
110 120 130 140 150
DMGFAEAHIH SLFSIQPSVH PQQLLGIVSE LLLLGLNPEP VFNALKKNPQ
160 170 180 190 200
LLKLSSMQMK RRSSYLRKLG LGEGKLKRVL SVCPEVFTMH QRDIDRVVKV
210 220 230 240 250
LREKCLFTAQ HITDVLHRCP TVLQEDPNEL EYKFQYAYFR MGLTHLDIVR
260 270 280 290 300
TNFLQYSITK IKQRHIYLER LGRYQTPDKK GQTQIPNPSL RNILRVSEAE
310 320 330 340
FLARTACSSV EEFQVFKKLL DQEEEEESES HASEEEEEEE EEEELL
Length:346
Mass (Da):40,249
Last modified:March 1, 2003 - v1
Checksum:iEA34F8129804CC07
GO

Sequence cautioni

The sequence AAH02280.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated
The sequence AAH55877.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti156 – 1561S → N in AAH02280 (PubMed:15489334).Curated
Sequence conflicti156 – 1561S → N in AAH55877 (PubMed:15489334).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK077142 mRNA. Translation: BAC36640.1.
BC002280 mRNA. Translation: AAH02280.1. Different initiation.
BC055877 mRNA. Translation: AAH55877.1. Different initiation.
BC064709 mRNA. Translation: AAH64709.1.
CCDSiCCDS35671.1.
RefSeqiNP_835152.1. NM_178051.3.
UniGeneiMm.52809.

Genome annotation databases

EnsembliENSMUST00000027492; ENSMUSP00000027492; ENSMUSG00000026273.
GeneIDi69821.
KEGGimmu:69821.
UCSCiuc007cdo.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK077142 mRNA. Translation: BAC36640.1.
BC002280 mRNA. Translation: AAH02280.1. Different initiation.
BC055877 mRNA. Translation: AAH55877.1. Different initiation.
BC064709 mRNA. Translation: AAH64709.1.
CCDSiCCDS35671.1.
RefSeqiNP_835152.1. NM_178051.3.
UniGeneiMm.52809.

3D structure databases

ProteinModelPortaliQ8BVN4.
SMRiQ8BVN4. Positions 89-326.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000027492.

PTM databases

PhosphoSiteiQ8BVN4.

Proteomic databases

MaxQBiQ8BVN4.
PaxDbiQ8BVN4.
PRIDEiQ8BVN4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000027492; ENSMUSP00000027492; ENSMUSG00000026273.
GeneIDi69821.
KEGGimmu:69821.
UCSCiuc007cdo.1. mouse.

Organism-specific databases

CTDi130916.
MGIiMGI:1918355. Mterf4.

Phylogenomic databases

eggNOGiNOG44738.
GeneTreeiENSGT00460000041648.
HOGENOMiHOG000069984.
HOVERGENiHBG081990.
InParanoidiQ8BVN4.
KOiK15032.
OMAiTEILHRC.
PhylomeDBiQ8BVN4.
TreeFamiTF329452.

Miscellaneous databases

NextBioi330419.
PROiQ8BVN4.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BVN4.
CleanExiMM_MTERFD2.
ExpressionAtlasiQ8BVN4. baseline and differential.
GenevisibleiQ8BVN4. MM.

Family and domain databases

InterProiIPR003690. MTERF.
[Graphical view]
PfamiPF02536. mTERF. 1 hit.
[Graphical view]
SMARTiSM00733. Mterf. 4 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Testis.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Kidney and Mammary tumor.
  3. Cited for: FUNCTION, TISSUE SPECIFICITY, SUBCELLULAR LOCATION, DISRUPTION PHENOTYPE, CONDITIONAL KNOCKOUT.

Entry informationi

Entry nameiMTEF4_MOUSE
AccessioniPrimary (citable) accession number: Q8BVN4
Secondary accession number(s): Q99LQ0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: March 1, 2003
Last modified: July 22, 2015
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.