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Q8BUP8

- FA43A_MOUSE

UniProt

Q8BUP8 - FA43A_MOUSE

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Protein

Protein FAM43A

Gene

Fam43a

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM43A
Gene namesi
Name:Fam43a
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 16

Organism-specific databases

MGIiMGI:2676309. Fam43a.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 424424Protein FAM43APRO_0000187025Add
BLAST

Proteomic databases

PRIDEiQ8BUP8.

PTM databases

PhosphoSiteiQ8BUP8.

Expressioni

Gene expression databases

BgeeiQ8BUP8.
GenevestigatoriQ8BUP8.

Structurei

3D structure databases

ProteinModelPortaliQ8BUP8.
SMRiQ8BUP8. Positions 66-190.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM43 family.Curated

Phylogenomic databases

eggNOGiNOG237605.
GeneTreeiENSGT00510000047407.
HOGENOMiHOG000231650.
HOVERGENiHBG051535.
InParanoidiQ8BUP8.
OMAiYCVADAR.
OrthoDBiEOG7J4470.
PhylomeDBiQ8BUP8.
TreeFamiTF314159.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_like_dom.
IPR006020. PTB/PI_dom.
[Graphical view]
PfamiPF14719. PID_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8BUP8-1 [UniParc]FASTAAdd to Basket

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        10         20         30         40         50
MLPWKKHKFE LLAEAPPRQA SKPKGYAVSL HYSALSSLAR ACPEGALSRV
60 70 80 90 100
GSMFRSKRKK LHITSEDPTY TVLYLGNATT IQARGDGCTD LAVGKIWSKS
110 120 130 140 150
EAGRQGTKMK LTVSAQGIRM VHAEERALRR PGHLYLLHRV TYCVADARLP
160 170 180 190 200
KVFAWVYRHE LKHKAVMLRC HAVLVSKPEK AQAMALLLYQ TSANALAEFK
210 220 230 240 250
RLKRRDDARH QQQELVGAHT IPLVPLRKLL LHGPCCYKPP VERSRSAPKL
260 270 280 290 300
GSITEDLLGE QQEEELQEEE EEHLEDCLEE EEEEDGVGDG DPAEEEAEAQ
310 320 330 340 350
RALVVAMQLE CEDLLDPLEN GHEEALGDGG VSLGPSSGTS LPLSVCASDM
360 370 380 390 400
KAQLSQLISD LGDLSFGNDV STLETDLRVT RLLSGESTGS ESSIEGGGLD
410 420
ATPVSPGNPS GPADSTSLDE PYSG
Length:424
Mass (Da):46,206
Last modified:March 1, 2003 - v1
Checksum:iAC7C4F9B751365C0
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK083036 mRNA. Translation: BAC38739.1.
BC022623 mRNA. Translation: AAH22623.1.
BC099947 mRNA. Translation: AAH99947.1.
BC138882 mRNA. Translation: AAI38883.1.
BC138884 mRNA. Translation: AAI38885.1.
CCDSiCCDS28103.1.
RefSeqiNP_808300.1. NM_177632.3.
UniGeneiMm.28244.

Genome annotation databases

EnsembliENSMUST00000059078; ENSMUSP00000056555; ENSMUSG00000046546.
GeneIDi224093.
KEGGimmu:224093.
UCSCiuc007ywy.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AK083036 mRNA. Translation: BAC38739.1 .
BC022623 mRNA. Translation: AAH22623.1 .
BC099947 mRNA. Translation: AAH99947.1 .
BC138882 mRNA. Translation: AAI38883.1 .
BC138884 mRNA. Translation: AAI38885.1 .
CCDSi CCDS28103.1.
RefSeqi NP_808300.1. NM_177632.3.
UniGenei Mm.28244.

3D structure databases

ProteinModelPortali Q8BUP8.
SMRi Q8BUP8. Positions 66-190.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q8BUP8.

Proteomic databases

PRIDEi Q8BUP8.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000059078 ; ENSMUSP00000056555 ; ENSMUSG00000046546 .
GeneIDi 224093.
KEGGi mmu:224093.
UCSCi uc007ywy.2. mouse.

Organism-specific databases

CTDi 131583.
MGIi MGI:2676309. Fam43a.

Phylogenomic databases

eggNOGi NOG237605.
GeneTreei ENSGT00510000047407.
HOGENOMi HOG000231650.
HOVERGENi HBG051535.
InParanoidi Q8BUP8.
OMAi YCVADAR.
OrthoDBi EOG7J4470.
PhylomeDBi Q8BUP8.
TreeFami TF314159.

Miscellaneous databases

ChiTaRSi FAM43A. mouse.
NextBioi 377071.
PROi Q8BUP8.
SOURCEi Search...

Gene expression databases

Bgeei Q8BUP8.
Genevestigatori Q8BUP8.

Family and domain databases

Gene3Di 2.30.29.30. 1 hit.
InterProi IPR011993. PH_like_dom.
IPR006020. PTB/PI_dom.
[Graphical view ]
Pfami PF14719. PID_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Spinal cord.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: CD-1 and FVB/N.
    Tissue: Brain, Neural stem cell and Salivary gland.

Entry informationi

Entry nameiFA43A_MOUSE
AccessioniPrimary (citable) accession number: Q8BUP8
Secondary accession number(s): A4FTY9, Q8R231
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: March 1, 2003
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3