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Protein

Protein FAM43A

Gene

Fam43a

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAM43A
Gene namesi
Name:Fam43a
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 16

Organism-specific databases

MGIiMGI:2676309. Fam43a.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 424424Protein FAM43APRO_0000187025Add
BLAST

Proteomic databases

PRIDEiQ8BUP8.

PTM databases

PhosphoSiteiQ8BUP8.

Expressioni

Gene expression databases

BgeeiQ8BUP8.
GenevisibleiQ8BUP8. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000056555.

Structurei

3D structure databases

ProteinModelPortaliQ8BUP8.
SMRiQ8BUP8. Positions 66-190.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the FAM43 family.Curated

Phylogenomic databases

eggNOGiNOG237605.
GeneTreeiENSGT00510000047407.
HOGENOMiHOG000231650.
HOVERGENiHBG051535.
InParanoidiQ8BUP8.
OMAiYCVADAR.
OrthoDBiEOG7J4470.
PhylomeDBiQ8BUP8.
TreeFamiTF314159.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_like_dom.
IPR006020. PTB/PI_dom.
[Graphical view]
PfamiPF14719. PID_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8BUP8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLPWKKHKFE LLAEAPPRQA SKPKGYAVSL HYSALSSLAR ACPEGALSRV
60 70 80 90 100
GSMFRSKRKK LHITSEDPTY TVLYLGNATT IQARGDGCTD LAVGKIWSKS
110 120 130 140 150
EAGRQGTKMK LTVSAQGIRM VHAEERALRR PGHLYLLHRV TYCVADARLP
160 170 180 190 200
KVFAWVYRHE LKHKAVMLRC HAVLVSKPEK AQAMALLLYQ TSANALAEFK
210 220 230 240 250
RLKRRDDARH QQQELVGAHT IPLVPLRKLL LHGPCCYKPP VERSRSAPKL
260 270 280 290 300
GSITEDLLGE QQEEELQEEE EEHLEDCLEE EEEEDGVGDG DPAEEEAEAQ
310 320 330 340 350
RALVVAMQLE CEDLLDPLEN GHEEALGDGG VSLGPSSGTS LPLSVCASDM
360 370 380 390 400
KAQLSQLISD LGDLSFGNDV STLETDLRVT RLLSGESTGS ESSIEGGGLD
410 420
ATPVSPGNPS GPADSTSLDE PYSG
Length:424
Mass (Da):46,206
Last modified:March 1, 2003 - v1
Checksum:iAC7C4F9B751365C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK083036 mRNA. Translation: BAC38739.1.
BC022623 mRNA. Translation: AAH22623.1.
BC099947 mRNA. Translation: AAH99947.1.
BC138882 mRNA. Translation: AAI38883.1.
BC138884 mRNA. Translation: AAI38885.1.
CCDSiCCDS28103.1.
RefSeqiNP_808300.1. NM_177632.3.
UniGeneiMm.28244.

Genome annotation databases

EnsembliENSMUST00000059078; ENSMUSP00000056555; ENSMUSG00000046546.
GeneIDi224093.
KEGGimmu:224093.
UCSCiuc007ywy.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK083036 mRNA. Translation: BAC38739.1.
BC022623 mRNA. Translation: AAH22623.1.
BC099947 mRNA. Translation: AAH99947.1.
BC138882 mRNA. Translation: AAI38883.1.
BC138884 mRNA. Translation: AAI38885.1.
CCDSiCCDS28103.1.
RefSeqiNP_808300.1. NM_177632.3.
UniGeneiMm.28244.

3D structure databases

ProteinModelPortaliQ8BUP8.
SMRiQ8BUP8. Positions 66-190.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000056555.

PTM databases

PhosphoSiteiQ8BUP8.

Proteomic databases

PRIDEiQ8BUP8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000059078; ENSMUSP00000056555; ENSMUSG00000046546.
GeneIDi224093.
KEGGimmu:224093.
UCSCiuc007ywy.2. mouse.

Organism-specific databases

CTDi131583.
MGIiMGI:2676309. Fam43a.

Phylogenomic databases

eggNOGiNOG237605.
GeneTreeiENSGT00510000047407.
HOGENOMiHOG000231650.
HOVERGENiHBG051535.
InParanoidiQ8BUP8.
OMAiYCVADAR.
OrthoDBiEOG7J4470.
PhylomeDBiQ8BUP8.
TreeFamiTF314159.

Miscellaneous databases

ChiTaRSiFam43a. mouse.
NextBioi377071.
PROiQ8BUP8.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BUP8.
GenevisibleiQ8BUP8. MM.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_like_dom.
IPR006020. PTB/PI_dom.
[Graphical view]
PfamiPF14719. PID_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Spinal cord.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: CD-1 and FVB/N.
    Tissue: Brain, Neural stem cell and Salivary gland.

Entry informationi

Entry nameiFA43A_MOUSE
AccessioniPrimary (citable) accession number: Q8BUP8
Secondary accession number(s): A4FTY9, Q8R231
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 16, 2004
Last sequence update: March 1, 2003
Last modified: June 24, 2015
This is version 81 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.