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Protein

CCR4-NOT transcription complex subunit 4

Gene

Cnot4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Has E3 ubiquitin ligase activity. Involved in activation of the JAK/STAT pathway (By similarity).By similarity

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri14 – 57RING-type; degeneratePROSITE-ProRule annotationAdd BLAST44
Zinc fingeri190 – 217C3H1-typePROSITE-ProRule annotationAdd BLAST28

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Ligase

Keywords - Biological processi

Transcription, Transcription regulation, Ubl conjugation pathway

Keywords - Ligandi

Metal-binding, RNA-binding, Zinc

Enzyme and pathway databases

ReactomeiR-MMU-429947. Deadenylation of mRNA.
R-MMU-6804115. TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain.
UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Recommended name:
CCR4-NOT transcription complex subunit 4 (EC:6.3.2.-)
Alternative name(s):
CCR4-associated factor 4
E3 ubiquitin-protein ligase CNOT4
Potential transcriptional repressor NOT4Hp
Gene namesi
Name:Cnot4
Synonyms:Not4
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 6

Organism-specific databases

MGIiMGI:1859026. Cnot4.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cytoplasm, Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000816801 – 575CCR4-NOT transcription complex subunit 4Add BLAST575

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei71PhosphoserineCombined sources1
Modified residuei301PhosphoserineBy similarity1
Modified residuei324PhosphoserineCombined sources1
Modified residuei432PhosphoserineBy similarity1
Modified residuei475Asymmetric dimethylarginineCombined sources1
Modified residuei483Asymmetric dimethylarginineBy similarity1
Modified residuei497Asymmetric dimethylarginineCombined sources1
Isoform 2 (identifier: Q8BT14-2)
Modified residuei296PhosphothreonineCombined sources1
Modified residuei298PhosphoserineCombined sources1
Modified residuei304PhosphoserineCombined sources1

Post-translational modificationi

Autoubiquitinated.By similarity

Keywords - PTMi

Methylation, Phosphoprotein, Ubl conjugation

Proteomic databases

PaxDbiQ8BT14.
PRIDEiQ8BT14.

PTM databases

iPTMnetiQ8BT14.
PhosphoSitePlusiQ8BT14.

Expressioni

Gene expression databases

BgeeiENSMUSG00000038784.
CleanExiMM_CNOT4.
ExpressionAtlasiQ8BT14. baseline and differential.
GenevisibleiQ8BT14. MM.

Interactioni

Subunit structurei

Interacts with CNOT1 via its C-terminus but does not stably associate with the CCR4-NOT complex. Binds E2 ubiquitin ligases via its RING domain. Interacts (via RING domain) with UBE2D2 (By similarity).By similarity

Protein-protein interaction databases

IntActiQ8BT14. 2 interactors.
STRINGi10090.ENSMUSP00000110645.

Structurei

Secondary structure

1575
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Beta strandi111 – 116Combined sources6
Turni118 – 120Combined sources3
Helixi123 – 127Combined sources5
Turni129 – 135Combined sources7
Beta strandi138 – 144Combined sources7
Beta strandi151 – 153Combined sources3
Beta strandi157 – 165Combined sources9
Helixi166 – 176Combined sources11
Beta strandi179 – 181Combined sources3
Beta strandi184 – 190Combined sources7

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2CPINMR-A101-198[»]
ProteinModelPortaliQ8BT14.
SMRiQ8BT14.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ8BT14.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini109 – 189RRMPROSITE-ProRule annotationAdd BLAST81

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili68 – 104Sequence analysisAdd BLAST37

Sequence similaritiesi

Contains 1 C3H1-type zinc finger.PROSITE-ProRule annotation
Contains 1 RING-type zinc finger.PROSITE-ProRule annotation
Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri14 – 57RING-type; degeneratePROSITE-ProRule annotationAdd BLAST44
Zinc fingeri190 – 217C3H1-typePROSITE-ProRule annotationAdd BLAST28

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

eggNOGiKOG2068. Eukaryota.
COG5175. LUCA.
GeneTreeiENSGT00390000000068.
HOGENOMiHOG000065696.
HOVERGENiHBG051043.
InParanoidiQ8BT14.
KOiK10643.
PhylomeDBiQ8BT14.
TreeFamiTF106134.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR000571. Znf_CCCH.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00361. RRM_1. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
PS50103. ZF_C3H1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8BT14-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSRSPDAKED PVECPLCMEP LEIDDINFFP CTCGYQICRF CWHRIRTDEN
60 70 80 90 100
GLCPACRKPY PEDPAVYKPL SQEELQRIKN EKKQKQNERK QKISENRKHL
110 120 130 140 150
ASVRVVQKNL VFVVGLSQRL ADPEVLKRPE YFGKFGKIHK VVINNSTSYA
160 170 180 190 200
GSQGPSASAY VTYIRSEDAL RAIQCVNNVV VDGRTLKASL GTTKYCSYFL
210 220 230 240 250
KNMQCPKPDC MYLHELGDEA ASFTKEEMQA GKHQEYEQKL LQELYKLNPN
260 270 280 290 300
FLQLSTGSVD KNKNKVTPLQ RYDTPIDKPS DSLSIGNGDN SQQISNSDTP
310 320 330 340 350
SPPPGLSKSN PVIPISSSNH SARSPFEGAV TESQSLFSDN FRHPNPIPSG
360 370 380 390 400
LPPFPSSPQT PSDWPTAPEP QSLFTSETIP VSSSTDWQAA FGFGSSKQPE
410 420 430 440 450
DDLGFDPFDV TRKALADLIE KELSVQDQPS LSPTSLQNAS SHTTTAKGPG
460 470 480 490 500
SGFLHSAAPT NANSLNSTFS VLPQRFPQFQ QHRAVYNSFG FPGQAARYPW
510 520 530 540 550
MAFPRNSIMH LNHTANPTSN SNFLDLNLPP QHNTGLGGIP IAGEEEVKVS
560 570
TMPLSASSHS LQQGQQPTSL HTTVA
Length:575
Mass (Da):63,474
Last modified:April 13, 2004 - v2
Checksum:iE0B763C8262D03CA
GO
Isoform 2 (identifier: Q8BT14-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     271-274: RYDT → S

Show »
Length:572
Mass (Da):63,026
Checksum:i55D834DB87099436
GO
Isoform 3 (identifier: Q8BT14-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     543-575: GEEEVKVSTMPLSASSHSLQQGQQPTSLHTTVA → DNNSSVESLN...LLQSSTLDRH

Note: No experimental confirmation available.
Show »
Length:713
Mass (Da):78,264
Checksum:i49303EA33BFA7A55
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti167E → Q in BAC25801 (PubMed:16141072).Curated1
Sequence conflicti177N → H in BAC25801 (PubMed:16141072).Curated1
Sequence conflicti207K → Q in BAC25801 (PubMed:16141072).Curated1
Sequence conflicti417D → Y in BAC27779 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_009930271 – 274RYDT → S in isoform 2. 1 Publication4
Alternative sequenceiVSP_009931543 – 575GEEEV…HTTVA → DNNSSVESLNMKEWQDGLRA LLPNININFGGLPNSSSPSN ANHSAPTSNTATTDSVSWDS PGSWTDPAIITGIPASSGNT LDSIQDDNPPHWLKSLQALT EMDGPSAASSQPHHSAPFST QIPLHRASWNPYPPPSNPSS FHSPPPGFQTAFRPPSKTPT DLLQSSTLDRH in isoform 3. 1 PublicationAdd BLAST33

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U71269 mRNA. Translation: AAD00181.1.
AK009234 mRNA. Translation: BAB26155.1.
AK028190 mRNA. Translation: BAC25801.1.
AK032248 mRNA. Translation: BAC27779.1.
BC058778 mRNA. Translation: AAH58778.1.
CCDSiCCDS19999.1. [Q8BT14-1]
CCDS80520.1. [Q8BT14-2]
RefSeqiNP_001157883.1. NM_001164411.1. [Q8BT14-2]
NP_001157885.1. NM_001164413.1.
NP_058573.3. NM_016877.4. [Q8BT14-1]
XP_011239709.1. XM_011241407.1. [Q8BT14-3]
XP_011239710.1. XM_011241408.2. [Q8BT14-3]
UniGeneiMm.214525.
Mm.398182.

Genome annotation databases

EnsembliENSMUST00000044163; ENSMUSP00000044137; ENSMUSG00000038784. [Q8BT14-1]
ENSMUST00000202417; ENSMUSP00000144409; ENSMUSG00000038784. [Q8BT14-2]
GeneIDi53621.
KEGGimmu:53621.
UCSCiuc009bid.2. mouse. [Q8BT14-3]
uc009big.2. mouse. [Q8BT14-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U71269 mRNA. Translation: AAD00181.1.
AK009234 mRNA. Translation: BAB26155.1.
AK028190 mRNA. Translation: BAC25801.1.
AK032248 mRNA. Translation: BAC27779.1.
BC058778 mRNA. Translation: AAH58778.1.
CCDSiCCDS19999.1. [Q8BT14-1]
CCDS80520.1. [Q8BT14-2]
RefSeqiNP_001157883.1. NM_001164411.1. [Q8BT14-2]
NP_001157885.1. NM_001164413.1.
NP_058573.3. NM_016877.4. [Q8BT14-1]
XP_011239709.1. XM_011241407.1. [Q8BT14-3]
XP_011239710.1. XM_011241408.2. [Q8BT14-3]
UniGeneiMm.214525.
Mm.398182.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2CPINMR-A101-198[»]
ProteinModelPortaliQ8BT14.
SMRiQ8BT14.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ8BT14. 2 interactors.
STRINGi10090.ENSMUSP00000110645.

PTM databases

iPTMnetiQ8BT14.
PhosphoSitePlusiQ8BT14.

Proteomic databases

PaxDbiQ8BT14.
PRIDEiQ8BT14.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000044163; ENSMUSP00000044137; ENSMUSG00000038784. [Q8BT14-1]
ENSMUST00000202417; ENSMUSP00000144409; ENSMUSG00000038784. [Q8BT14-2]
GeneIDi53621.
KEGGimmu:53621.
UCSCiuc009bid.2. mouse. [Q8BT14-3]
uc009big.2. mouse. [Q8BT14-1]

Organism-specific databases

CTDi4850.
MGIiMGI:1859026. Cnot4.

Phylogenomic databases

eggNOGiKOG2068. Eukaryota.
COG5175. LUCA.
GeneTreeiENSGT00390000000068.
HOGENOMiHOG000065696.
HOVERGENiHBG051043.
InParanoidiQ8BT14.
KOiK10643.
PhylomeDBiQ8BT14.
TreeFamiTF106134.

Enzyme and pathway databases

UniPathwayiUPA00143.
ReactomeiR-MMU-429947. Deadenylation of mRNA.
R-MMU-6804115. TP53 regulates transcription of additional cell cycle genes whose exact role in the p53 pathway remain uncertain.

Miscellaneous databases

EvolutionaryTraceiQ8BT14.
PROiQ8BT14.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000038784.
CleanExiMM_CNOT4.
ExpressionAtlasiQ8BT14. baseline and differential.
GenevisibleiQ8BT14. MM.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
IPR003954. RRM_dom_euk.
IPR000571. Znf_CCCH.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00361. RRM_1. 1 hit.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 1 hit.
PS50103. ZF_C3H1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCNOT4_MOUSE
AccessioniPrimary (citable) accession number: Q8BT14
Secondary accession number(s): Q8CCR4, Q9CV74, Q9Z1D0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 13, 2004
Last sequence update: April 13, 2004
Last modified: November 2, 2016
This is version 132 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.