Q8BSE9 (Q8BSE9_MOUSE) Unreviewed, UniProtKB/TrEMBL
Last modified
April 3, 2013.
Version 52.
History...
Clusters with 
Names·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize orderNames and origin
| Protein names | Submitted name: Putative uncharacterized protein EMBL BAC28752.1 | ||||
| Gene names |
| ||||
| Organism | Mus musculus (Mouse) EMBL BAC28752.1 | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus |
Protein attributes
| Sequence length | 64 AA. |
| Sequence status | Fragment. |
| Protein existence | Evidence at transcript level |
Ontologies
| Keywords | |
|---|---|
| Cellular component | Golgi apparatus SAAS SAAS001675 Membrane |
| Domain | Transmembrane Transmembrane helix SAAS SAAS001675 |
| Molecular function | Glycosyltransferase SAAS SAAS001675 Transferase |
| Gene Ontology (GO) | |
| Biological_process | protein glycosylation Inferred from direct assay PubMed 9184827. Source: MGI |
| Cellular_component | integral to Golgi membrane Inferred from electronic annotation. Source: InterPro |
| Molecular_function | beta-galactoside (CMP) alpha-2,3-sialyltransferase activity Inferred from direct assay PubMed 9184827. Source: MGI |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Experimental info | ||||||||
|---|---|---|---|---|---|---|---|---|
| Non-terminal residue | 1 | 1 | EMBL BAC28752.1 | |||||
Sequences
References
| [1] | "High-efficiency full-length cDNA cloning." Carninci P., Hayashizaki Y. Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [2] | "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes." Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y. Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [3] | "RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer." Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A.  Hayashizaki Y.Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [4] | "Functional annotation of a full-length mouse cDNA collection." The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium Nature 409:685-690(2001) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [5] | Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. Hayashizaki Y. Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [6] | "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs." The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team Nature 420:563-573(2002) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [7] | "The Transcriptional Landscape of the Mammalian Genome." The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) Science 309:1559-1563(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| [8] | "Antisense Transcription in the Mammalian Transcriptome." RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: C57BL/6J EMBL BAC28752.1. Tissue: Embryonic body between diaphragm region and neck EMBL BAC28752.1. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AK034554 mRNA. Translation: BAC28752.1. |
| IPI | IPI00131811. |
| UniGene | Mm.200388. |
3D structure databases | |
| ModBase | Search... |
Protein family/group databases | |
| CAZy | GT29. Glycosyltransferase Family 29. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Organism-specific databases | |
| MGI | MGI:99427. St3gal2. |
Phylogenomic databases | |
| InParanoid | Q8BSE9. |
Gene expression databases | |
| Genevestigator | Q8BSE9. |
Family and domain databases | |
| InterPro | IPR001675. Glyco_trans_29. [Graphical view] |
| Pfam | PF00777. Glyco_transf_29. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Other | |
| SOURCE | Search... |
Entry information
| Entry name | Q8BSE9_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q8BSE9 | ||||||||
| Entry history |
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| Entry status | Unreviewed (UniProtKB/TrEMBL) | ||||||||