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Q8BRL5

- Q8BRL5_MOUSE

UniProt

Q8BRL5 - Q8BRL5_MOUSE

Protein
Submitted name:

Putative uncharacterized protein

Gene

Rora

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 83 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. DNA binding Source: MGI
    2. ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity Source: InterPro
    3. sequence-specific DNA binding transcription factor activity Source: MGI
    4. steroid hormone receptor activity Source: InterPro

    GO - Biological processi

    1. cerebellar Purkinje cell differentiation Source: MGI
    2. cGMP metabolic process Source: MGI
    3. circadian rhythm Source: Ensembl
    4. nitric oxide biosynthetic process Source: MGI
    5. positive regulation of transcription from RNA polymerase II promoter Source: MGI
    6. regulation of macrophage activation Source: MGI
    7. regulation of transcription, DNA-templated Source: MGI

    Keywords - Biological processi

    Transcription, Transcription regulationSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative uncharacterized proteinImported
    Gene namesi
    Name:RoraImported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

    Organism-specific databases

    MGIiMGI:104661. Rora.

    Subcellular locationi

    GO - Cellular componenti

    1. nucleus Source: UniProtKB-KW

    Keywords - Cellular componenti

    NucleusSAAS annotation

    Expressioni

    Gene expression databases

    ArrayExpressiQ8BRL5.
    BgeeiQ8BRL5.
    GenevestigatoriQ8BRL5.

    Interactioni

    Structurei

    3D structure databases

    ProteinModelPortaliQ8BRL5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    HOVERGENiHBG106848.
    InParanoidiQ8BRL5.

    Family and domain databases

    Gene3Di1.10.565.10. 1 hit.
    InterProiIPR008946. Nucl_hormone_rcpt_ligand-bd.
    IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
    IPR003079. ROR_rcpt.
    IPR001723. Str_hrmn_rcpt.
    [Graphical view]
    PfamiPF00104. Hormone_recep. 1 hit.
    [Graphical view]
    PRINTSiPR01293. RORNUCRECPTR.
    PR00398. STRDHORMONER.
    SMARTiSM00430. HOLI. 1 hit.
    [Graphical view]
    SUPFAMiSSF48508. SSF48508. 1 hit.

    Sequencei

    Sequence statusi: Fragment.

    Q8BRL5-1 [UniParc]FASTAAdd to Basket

    « Hide

    TPEGSKADSA VSSFYLDIQP SPDQSGLDIN GIKPEPICDY TPASGFFPYC    50
    SFTNGETSPT VSMAELEHLA QNISKSHLET CQYLREELQQ ITWQTFLQEE 100
    IENYQNKQRE VMWQLCAIKI TEAIQYVVEF AKRIDGFMEL CQNDQIVLLK 150
    AGSLEVVFIR MCRAFDSQNN TVYFDGKYAS PDVFKSLGCE DFISFVFEFG 200
    KSLCSMHLTE DEIALFSAFV LMSADRSWLQ EKVKIEKLQQ KIQLALQHVL 250
    QKNHREDGIL TKLICKVSTL RALCGRHTEK LMAFKAIYPD IVRLHFPPLY 300
    KELFTSEFEP AMQIDG 316
    Length:316
    Mass (Da):36,183
    Last modified:March 1, 2003 - v1
    Checksum:i1CC922302653CCDD
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Non-terminal residuei1 – 11Imported

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK043990 mRNA. Translation: BAC31728.1.
    UniGeneiMm.378450.
    Mm.391890.
    Mm.427266.
    Mm.445802.
    Mm.491288.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AK043990 mRNA. Translation: BAC31728.1 .
    UniGenei Mm.378450.
    Mm.391890.
    Mm.427266.
    Mm.445802.
    Mm.491288.

    3D structure databases

    ProteinModelPortali Q8BRL5.
    ModBasei Search...
    MobiDBi Search...

    Chemistry

    BindingDBi Q8BRL5.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Organism-specific databases

    MGIi MGI:104661. Rora.

    Phylogenomic databases

    HOVERGENi HBG106848.
    InParanoidi Q8BRL5.

    Miscellaneous databases

    ChiTaRSi RORA. mouse.
    SOURCEi Search...

    Gene expression databases

    ArrayExpressi Q8BRL5.
    Bgeei Q8BRL5.
    Genevestigatori Q8BRL5.

    Family and domain databases

    Gene3Di 1.10.565.10. 1 hit.
    InterProi IPR008946. Nucl_hormone_rcpt_ligand-bd.
    IPR000536. Nucl_hrmn_rcpt_lig-bd_core.
    IPR003079. ROR_rcpt.
    IPR001723. Str_hrmn_rcpt.
    [Graphical view ]
    Pfami PF00104. Hormone_recep. 1 hit.
    [Graphical view ]
    PRINTSi PR01293. RORNUCRECPTR.
    PR00398. STRDHORMONER.
    SMARTi SM00430. HOLI. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48508. SSF48508. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    5. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    7. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: CortexImported.

    Entry informationi

    Entry nameiQ8BRL5_MOUSE
    AccessioniPrimary (citable) accession number: Q8BRL5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 83 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)