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Q8BQ46

- Q8BQ46_MOUSE

UniProt

Q8BQ46 - Q8BQ46_MOUSE

Protein
Submitted name:

Protein Taf15

Gene

Taf15

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 103 (01 Oct 2014)
      Sequence version 1 (01 Mar 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro
    3. zinc ion binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Taf15Imported
    Submitted name:
    TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factorImported
    Gene namesi
    Name:Taf15Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 11

    Organism-specific databases

    MGIiMGI:1917689. Taf15.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. nucleus Source: Ensembl

    Expressioni

    Gene expression databases

    GenevestigatoriQ8BQ46.

    Interactioni

    Protein-protein interaction databases

    MINTiMINT-1741816.
    STRINGi10090.ENSMUSP00000103770.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000063105.
    HOGENOMiHOG000038010.
    HOVERGENiHBG005755.
    InParanoidiQ8BQ46.
    KOiK14651.
    OMAiQKQSSYS.
    OrthoDBiEOG7DZ8N7.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    4.10.1060.10. 1 hit.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    IPR001876. Znf_RanBP2.
    [Graphical view]
    PfamiPF00076. RRM_1. 1 hit.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view]
    SMARTiSM00360. RRM. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view]
    PROSITEiPS50102. RRM. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q8BQ46-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDSGSYSQS GGEQQSYSSY GNQGSQGYGQ TPQGYSGYGQ TTDSSYGQNY    50
    GGYSGYGQNQ SGYSQSYGSY ENQKQSSYGQ QSYNNQGQQN TESSGGQGGR 100
    APSYGQSDYG QQDSYDQQSG YDQHQGSYDE QSNYQQHDSY NQNQQSYHSQ 150
    RENYSHHTQD DRRDVSRYGE DNRGYGGSQG GGRGRGGYDK DGRGPMTGSS 200
    GGDRGGFKNF GGHRDYGPRP DADSESDNSD NNTIFVQGLG EGVSTDQVGE 250
    FFKQIGIIKT NKKTGKPMIN LYTDKDTGKP KGEATVSFDD PPSAKAAIDW 300
    FDGKEFHGNI IKVSFATRRP EFMRGGGSGG GRRGRGGYRG RGGFQGRGGD 350
    PKNGDWVCPN PSCGNMNFAR RNSCNQCNEP RPEDSRPSGG DFRGRGYGGE 400
    RGYRGRGGRG GDRGGYGGDR SGGGYGGDRS GGGYGGDRGG SYGGDRGGYG 450
    GDRGGSYGGD RGGYGGDRGG YGGDRGGYGG DRGGYGGDRG GYGGDRSRGA 500
    YGGDRGGSGS GSGGYGGDRS GGYGGDRSGG YGGDRGGYGG KMGGRNDYRN 550
    DQRNRPY 557
    Length:557
    Mass (Da):58,601
    Last modified:March 1, 2003 - v1
    Checksum:i2BF650D055E092E1
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL596122 Genomic DNA. No translation available.
    AL663096 Genomic DNA. No translation available.
    BC137591 mRNA. Translation: AAI37592.1.
    AK051568 mRNA. Translation: BAC34676.1.
    AK146331 mRNA. Translation: BAE27086.1.
    RefSeqiNP_081703.1. NM_027427.2.
    UniGeneiMm.181050.

    Genome annotation databases

    EnsembliENSMUST00000021018; ENSMUSP00000021018; ENSMUSG00000020680.
    GeneIDi70439.
    KEGGimmu:70439.
    UCSCiuc007kpf.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AL596122 Genomic DNA. No translation available.
    AL663096 Genomic DNA. No translation available.
    BC137591 mRNA. Translation: AAI37592.1 .
    AK051568 mRNA. Translation: BAC34676.1 .
    AK146331 mRNA. Translation: BAE27086.1 .
    RefSeqi NP_081703.1. NM_027427.2.
    UniGenei Mm.181050.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    MINTi MINT-1741816.
    STRINGi 10090.ENSMUSP00000103770.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000021018 ; ENSMUSP00000021018 ; ENSMUSG00000020680 .
    GeneIDi 70439.
    KEGGi mmu:70439.
    UCSCi uc007kpf.1. mouse.

    Organism-specific databases

    CTDi 8148.
    MGIi MGI:1917689. Taf15.

    Phylogenomic databases

    GeneTreei ENSGT00530000063105.
    HOGENOMi HOG000038010.
    HOVERGENi HBG005755.
    InParanoidi Q8BQ46.
    KOi K14651.
    OMAi QKQSSYS.
    OrthoDBi EOG7DZ8N7.

    Miscellaneous databases

    ChiTaRSi TAF15. mouse.
    NextBioi 331627.
    PROi Q8BQ46.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q8BQ46.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    4.10.1060.10. 1 hit.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    IPR001876. Znf_RanBP2.
    [Graphical view ]
    Pfami PF00076. RRM_1. 1 hit.
    PF00641. zf-RanBP. 1 hit.
    [Graphical view ]
    SMARTi SM00360. RRM. 1 hit.
    SM00547. ZnF_RBZ. 1 hit.
    [Graphical view ]
    PROSITEi PS50102. RRM. 1 hit.
    PS01358. ZF_RANBP2_1. 1 hit.
    PS50199. ZF_RANBP2_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "High-efficiency full-length cDNA cloning."
      Carninci P., Hayashizaki Y.
      Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
      Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
      Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    4. "Functional annotation of a full-length mouse cDNA collection."
      The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
      Nature 409:685-690(2001)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    5. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
      The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
      Nature 420:563-573(2002)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    7. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: BrainImported.
    8. Cited for: NUCLEOTIDE SEQUENCE.
    9. "The Transcriptional Landscape of the Mammalian Genome."
      The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
      Science 309:1559-1563(2005)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    10. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: C57BL/6JImported.
      Tissue: Spinal ganglionImported.
    11. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    12. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ8BQ46_MOUSE
    AccessioniPrimary (citable) accession number: Q8BQ46
    Entry historyi
    Integrated into UniProtKB/TrEMBL: March 1, 2003
    Last sequence update: March 1, 2003
    Last modified: October 1, 2014
    This is version 103 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3