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Protein
Submitted name:

Putative uncharacterized protein

Gene

Sptbn1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Putative uncharacterized proteinImported
Gene namesi
Name:Sptbn1Imported
Synonyms:Spnb2Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Organism-specific databases

MGIiMGI:98388. Sptbn1.

PTM / Processingi

Proteomic databases

PaxDbiQ8BQ35.
PRIDEiQ8BQ35.

Expressioni

Gene expression databases

BgeeiQ8BQ35.
GenevisibleiQ8BQ35. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Structurei

3D structure databases

ProteinModelPortaliQ8BQ35.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini330 – 440111PHInterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG102554.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_dom-like.
IPR001605. PH_dom-spectrin-type.
IPR001849. PH_domain.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00435. Spectrin. 2 hits.
[Graphical view]
PRINTSiPR00683. SPECTRINPH.
SMARTiSM00233. PH. 1 hit.
SM00150. SPEC. 2 hits.
[Graphical view]
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiPS50003. PH_DOMAIN. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Fragment.

Q8BQ35-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
AARLQAAYAG DKADDIQKRE NEVLEAWKSL LDACEGRRVR LVDTGDKFRF
60 70 80 90 100
FSMVRDLMLW MEDVIRQIEA QEKPRDVSSV ELLMNNHQGI KAEIDARNDS
110 120 130 140 150
FTACIELGKS LLARKHYASE EIKEKLLQLT EKRKEMIDKW EDRWEWLRLI
160 170 180 190 200
LEVHQFSRDA SVAEAWLLGQ EPYLSSREIG QSVDEVEKLI KRHEAFEKSA
210 220 230 240 250
ATWDERFSAL ERLTTLELLE VRRQQEEEER KRRPPSPDPN TKVSEEAESQ
260 270 280 290 300
QWDTSKGDQV SQNGLPAEQG SPRMAGTMET SEMVNGAAEQ RTSSKESSPV
310 320 330 340 350
PSPTLDRKAK SALPAQSAAT LPARTLETPA AQMEGFLNRK HEWEAHNKKA
360 370 380 390 400
SSRSWHNVYC VINNQEMGFY KDAKSAASGI PYHSEVPVSL KEAICEVALD
410 420 430 440 450
YKKKKHVFKL RLSDGNEYLF QAKDDEEMNT WIQAISSAIS SDKHDTSAST
460 470 480 490
QSTPASSRAQ TLPTSVVTIT SESSPGKREK DKEKDKEKRF SLFGKKK
Length:497
Mass (Da):56,537
Last modified:March 1, 2003 - v1
Checksum:iBBEA4D95709BF5F0
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK051630 mRNA. Translation: BAC34698.1.
RefSeqiNP_787030.2. NM_175836.2.
UniGeneiMm.123110.
Mm.466085.

Genome annotation databases

GeneIDi20742.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK051630 mRNA. Translation: BAC34698.1.
RefSeqiNP_787030.2. NM_175836.2.
UniGeneiMm.123110.
Mm.466085.

3D structure databases

ProteinModelPortaliQ8BQ35.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000006629.

Proteomic databases

PaxDbiQ8BQ35.
PRIDEiQ8BQ35.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi20742.

Organism-specific databases

CTDi6711.
MGIiMGI:98388. Sptbn1.

Phylogenomic databases

eggNOGiKOG0035. Eukaryota.
COG5069. LUCA.
HOVERGENiHBG102554.

Miscellaneous databases

NextBioi299385.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BQ35.
GenevisibleiQ8BQ35. MM.

Family and domain databases

Gene3Di2.30.29.30. 1 hit.
InterProiIPR011993. PH_dom-like.
IPR001605. PH_dom-spectrin-type.
IPR001849. PH_domain.
IPR018159. Spectrin/alpha-actinin.
IPR002017. Spectrin_repeat.
[Graphical view]
PfamiPF00435. Spectrin. 2 hits.
[Graphical view]
PRINTSiPR00683. SPECTRINPH.
SMARTiSM00233. PH. 1 hit.
SM00150. SPEC. 2 hits.
[Graphical view]
SUPFAMiSSF50729. SSF50729. 1 hit.
PROSITEiPS50003. PH_DOMAIN. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "High-efficiency full-length cDNA cloning."
    Carninci P., Hayashizaki Y.
    Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  2. "Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
    Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
    Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  4. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  5. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  6. "Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
    The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
    Nature 420:563-573(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  7. "The Transcriptional Landscape of the Mammalian Genome."
    The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
    Science 309:1559-1563(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.
  8. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: C57BL/6JImported.
    Tissue: Spinal ganglionImported.

Entry informationi

Entry nameiQ8BQ35_MOUSE
AccessioniPrimary (citable) accession number: Q8BQ35
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: March 16, 2016
This is version 94 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.