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Protein

Cytoskeleton-associated protein 4

Gene

Ckap4

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

High-affinity epithelial cell surface receptor for APF.By similarity
Mediates the anchoring of the endoplasmic reticulum to microtubules.By similarity

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

ReactomeiR-MMU-5683826. Surfactant metabolism.

Names & Taxonomyi

Protein namesi
Recommended name:
Cytoskeleton-associated protein 4
Alternative name(s):
63-kDa cytoskeleton-linking membrane protein
Short name:
Climp-63
Short name:
p63
Gene namesi
Name:Ckap4
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 10

Organism-specific databases

MGIiMGI:2444926. Ckap4.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini1 – 8585CytoplasmicSequence analysisAdd
BLAST
Transmembranei86 – 10823HelicalSequence analysisAdd
BLAST
Topological domaini109 – 575467ExtracellularSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Cytoplasm, Cytoskeleton, Endoplasmic reticulum, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 575575Cytoskeleton-associated protein 4PRO_0000252418Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei3 – 31PhosphoserineBy similarity
Modified residuei17 – 171PhosphoserineBy similarity
Modified residuei19 – 191PhosphoserineBy similarity
Modified residuei21 – 211N6-acetyllysineCombined sources
Lipidationi79 – 791S-palmitoyl cysteine; by ZDHHC2By similarity
Modified residuei211 – 2111PhosphoserineBy similarity
Modified residuei292 – 2921PhosphoserineBy similarity
Modified residuei367 – 3671PhosphoserineCombined sources

Post-translational modificationi

Reversibly palmitoylated. Palmitoylation at Cys-79 by DHHC2 is required for its trafficking from the ER to the plasma membrane and for its perinuclear localization (By similarity).By similarity
Increased phosphorylation during mitosis prevents binding to microtubules.By similarity

Keywords - PTMi

Acetylation, Lipoprotein, Palmitate, Phosphoprotein

Proteomic databases

EPDiQ8BMK4.
MaxQBiQ8BMK4.
PaxDbiQ8BMK4.
PRIDEiQ8BMK4.

PTM databases

iPTMnetiQ8BMK4.
PhosphoSiteiQ8BMK4.
SwissPalmiQ8BMK4.

Expressioni

Gene expression databases

BgeeiQ8BMK4.
CleanExiMM_CKAP4.
GenevisibleiQ8BMK4. MM.

Interactioni

Protein-protein interaction databases

BioGridi229721. 1 interaction.
IntActiQ8BMK4. 3 interactions.
MINTiMINT-4111578.
STRINGi10090.ENSMUSP00000050336.

Structurei

3D structure databases

ProteinModelPortaliQ8BMK4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili125 – 19369Sequence analysisAdd
BLAST
Coiled coili236 – 438203Sequence analysisAdd
BLAST
Coiled coili507 – 57569Sequence analysisAdd
BLAST

Keywords - Domaini

Coiled coil, Signal-anchor, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IIRS. Eukaryota.
ENOG4111Q54. LUCA.
GeneTreeiENSGT00390000015968.
HOGENOMiHOG000060146.
HOVERGENiHBG101940.
InParanoidiQ8BMK4.
KOiK13999.
OMAiSEGYKQD.
OrthoDBiEOG7VX8VQ.
PhylomeDBiQ8BMK4.
TreeFamiTF332395.

Family and domain databases

InterProiIPR028428. Ckap4.
[Graphical view]
PANTHERiPTHR18937:SF243. PTHR18937:SF243. 2 hits.

Sequencei

Sequence statusi: Complete.

Q8BMK4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPSAKQRGSK GGHGAASPSD KGAHPSGGAD DVAKKPPAAP QQPQPPAPHP
60 70 80 90 100
PQHPQNQAHR GGHRGRSSAA TANASSASCS RRLGRVLNFL FYLSLVAAAA
110 120 130 140 150
FSGWYVHHVL EEVQQVRRGH QDFSRQRDEL GQGLQGVEQK VQSLQATFGT
160 170 180 190 200
FESLLRNSQH KQDLTEKAVK EGESELNRIS EVLQKLQNEI LKDLSDGIHV
210 220 230 240 250
VKDARERDFT SLENTVEERL TELTKSINDN IAIFTDVQKR SQKEINEVKM
260 270 280 290 300
KVASLEESKG DRSQDVKTLK DAVKEVQASM MSRERDIEAL KSSLQTMESD
310 320 330 340 350
VYTEVRELVS LKQEQQAFKQ AADSERLALQ ALTEKLLRSE ESSSRLPEDI
360 370 380 390 400
RRLEEELQQL KVGAHGSEEG AVFKDSKALE ELQRQIEGLG ARLQYVEDGV
410 420 430 440 450
YSMQVASARH TESLESLLSK SQEYEQRLAM LQEHVGNLGS SSDLASTVRS
460 470 480 490 500
LGETQLALSS DLKELKQSLG ELPGTVESLQ EQVLSLLSQD QAQAEGLPPQ
510 520 530 540 550
DFLDRLSSLD NLKSSVSQVE SDLKMLRTAV DSLVAYSVKI ETNENNLESA
560 570
KGLLDDLRND LDRLFLKVEK IHEKI
Length:575
Mass (Da):63,692
Last modified:October 17, 2006 - v2
Checksum:i6967F47741C7033D
GO

Sequence cautioni

The sequence AAH25522.1 differs from that shown.Contaminating sequence. Vector contamination at the N-terminus.Curated
The sequence AAH25522.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally shortened.Curated
The sequence BAC41005.1 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti243 – 2431K → M in AAH25522 (PubMed:15489334).Curated
Sequence conflicti281 – 2811M → I in BAC41005 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC140333 Genomic DNA. No translation available.
AC150314 Genomic DNA. No translation available.
BC025522 mRNA. Translation: AAH25522.1. Different initiation.
BC138318 mRNA. Translation: AAI38319.1.
BC138320 mRNA. Translation: AAI38321.1.
AK030708 mRNA. Translation: BAC27092.1.
AK089935 mRNA. Translation: BAC41005.1. Different initiation.
CCDSiCCDS24080.1.
RefSeqiNP_780660.1. NM_175451.1.
UniGeneiMm.334999.

Genome annotation databases

EnsembliENSMUST00000053871; ENSMUSP00000050336; ENSMUSG00000046841.
ENSMUST00000167671; ENSMUSP00000130304; ENSMUSG00000046841.
GeneIDi216197.
KEGGimmu:216197.
UCSCiuc007gkq.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC140333 Genomic DNA. No translation available.
AC150314 Genomic DNA. No translation available.
BC025522 mRNA. Translation: AAH25522.1. Different initiation.
BC138318 mRNA. Translation: AAI38319.1.
BC138320 mRNA. Translation: AAI38321.1.
AK030708 mRNA. Translation: BAC27092.1.
AK089935 mRNA. Translation: BAC41005.1. Different initiation.
CCDSiCCDS24080.1.
RefSeqiNP_780660.1. NM_175451.1.
UniGeneiMm.334999.

3D structure databases

ProteinModelPortaliQ8BMK4.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi229721. 1 interaction.
IntActiQ8BMK4. 3 interactions.
MINTiMINT-4111578.
STRINGi10090.ENSMUSP00000050336.

PTM databases

iPTMnetiQ8BMK4.
PhosphoSiteiQ8BMK4.
SwissPalmiQ8BMK4.

Proteomic databases

EPDiQ8BMK4.
MaxQBiQ8BMK4.
PaxDbiQ8BMK4.
PRIDEiQ8BMK4.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000053871; ENSMUSP00000050336; ENSMUSG00000046841.
ENSMUST00000167671; ENSMUSP00000130304; ENSMUSG00000046841.
GeneIDi216197.
KEGGimmu:216197.
UCSCiuc007gkq.1. mouse.

Organism-specific databases

CTDi10970.
MGIiMGI:2444926. Ckap4.

Phylogenomic databases

eggNOGiENOG410IIRS. Eukaryota.
ENOG4111Q54. LUCA.
GeneTreeiENSGT00390000015968.
HOGENOMiHOG000060146.
HOVERGENiHBG101940.
InParanoidiQ8BMK4.
KOiK13999.
OMAiSEGYKQD.
OrthoDBiEOG7VX8VQ.
PhylomeDBiQ8BMK4.
TreeFamiTF332395.

Enzyme and pathway databases

ReactomeiR-MMU-5683826. Surfactant metabolism.

Miscellaneous databases

ChiTaRSiCkap4. mouse.
PROiQ8BMK4.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BMK4.
CleanExiMM_CKAP4.
GenevisibleiQ8BMK4. MM.

Family and domain databases

InterProiIPR028428. Ckap4.
[Graphical view]
PANTHERiPTHR18937:SF243. PTHR18937:SF243. 2 hits.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6J.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: FVB/N.
    Tissue: Brain and Mammary tumor.
  3. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 33-575.
    Strain: C57BL/6J.
    Tissue: Embryo and Submandibular gland.
  4. Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-367, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain, Brown adipose tissue, Heart, Kidney, Liver, Lung, Pancreas, Spleen and Testis.
  5. "SIRT5-mediated lysine desuccinylation impacts diverse metabolic pathways."
    Park J., Chen Y., Tishkoff D.X., Peng C., Tan M., Dai L., Xie Z., Zhang Y., Zwaans B.M., Skinner M.E., Lombard D.B., Zhao Y.
    Mol. Cell 50:919-930(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: ACETYLATION [LARGE SCALE ANALYSIS] AT LYS-21, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Embryonic fibroblast.

Entry informationi

Entry nameiCKAP4_MOUSE
AccessioniPrimary (citable) accession number: Q8BMK4
Secondary accession number(s): B2RRB4, Q8BTK8, Q8R3F2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 17, 2006
Last sequence update: October 17, 2006
Last modified: June 8, 2016
This is version 101 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.