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Protein

Lipoma HMGIC fusion partner

Gene

Lhfp

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Lipoma HMGIC fusion partner
Gene namesi
Name:Lhfp
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:1920048. Lhfp.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei84 – 10421HelicalSequence analysisAdd
BLAST
Transmembranei123 – 14321HelicalSequence analysisAdd
BLAST
Transmembranei166 – 18621HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 2323Sequence analysisAdd
BLAST
Chaini24 – 200177Lipoma HMGIC fusion partnerPRO_0000244757Add
BLAST

Proteomic databases

MaxQBiQ8BM86.
PaxDbiQ8BM86.
PRIDEiQ8BM86.

Expressioni

Gene expression databases

BgeeiQ8BM86.
CleanExiMM_LHFP.
GenevisibleiQ8BM86. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000056364.

Structurei

3D structure databases

ProteinModelPortaliQ8BM86.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the LHFP family.Curated

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ8BM86.
OMAiSTEWRIC.
OrthoDBiEOG7TF7BG.
PhylomeDBiQ8BM86.
TreeFamiTF321143.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q8BM86-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASSLTCTGV IWALLSFLSA ATSCVGFFMP YWLWGSQLGK PVSFGTFRRC
60 70 80 90 100
SYPVHDESRQ MMVMVEECGR YASFQGIPST EWRICTIVTG LGCGLLLLVA
110 120 130 140 150
LTALMGCCVS ELISRTVGRV AGGIQFLGGL LIGAGCALYP LGWDSEEVRQ
160 170 180 190 200
TCGYISGQFD LGKCEIGWAY YCTGAGAAAA MLLCTWMACF SGKKQKHYPY
Length:200
Mass (Da):21,626
Last modified:March 1, 2003 - v1
Checksum:iB79B02170291C9A1
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti95 – 951L → P in BAE35174 (PubMed:15489334).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK034532 mRNA. Translation: BAC28745.1.
AK159126 mRNA. Translation: BAE34840.1.
AK159549 mRNA. Translation: BAE35174.1.
AK172390 mRNA. Translation: BAE42980.1.
AK172532 mRNA. Translation: BAE43053.1.
BC052079 mRNA. Translation: AAH52079.1.
BC095934 mRNA. Translation: AAH95934.1.
CCDSiCCDS17344.1.
RefSeqiNP_780595.1. NM_175386.3.
UniGeneiMm.118617.

Genome annotation databases

EnsembliENSMUST00000059562; ENSMUSP00000056364; ENSMUSG00000048332.
ENSMUST00000147139; ENSMUSP00000119019; ENSMUSG00000048332.
GeneIDi108927.
KEGGimmu:108927.
UCSCiuc008pep.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK034532 mRNA. Translation: BAC28745.1.
AK159126 mRNA. Translation: BAE34840.1.
AK159549 mRNA. Translation: BAE35174.1.
AK172390 mRNA. Translation: BAE42980.1.
AK172532 mRNA. Translation: BAE43053.1.
BC052079 mRNA. Translation: AAH52079.1.
BC095934 mRNA. Translation: AAH95934.1.
CCDSiCCDS17344.1.
RefSeqiNP_780595.1. NM_175386.3.
UniGeneiMm.118617.

3D structure databases

ProteinModelPortaliQ8BM86.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000056364.

Proteomic databases

MaxQBiQ8BM86.
PaxDbiQ8BM86.
PRIDEiQ8BM86.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000059562; ENSMUSP00000056364; ENSMUSG00000048332.
ENSMUST00000147139; ENSMUSP00000119019; ENSMUSG00000048332.
GeneIDi108927.
KEGGimmu:108927.
UCSCiuc008pep.1. mouse.

Organism-specific databases

CTDi10186.
MGIiMGI:1920048. Lhfp.

Phylogenomic databases

eggNOGiKOG4026. Eukaryota.
ENOG410XSUB. LUCA.
GeneTreeiENSGT00550000074479.
HOGENOMiHOG000007007.
HOVERGENiHBG080585.
InParanoidiQ8BM86.
OMAiSTEWRIC.
OrthoDBiEOG7TF7BG.
PhylomeDBiQ8BM86.
TreeFamiTF321143.

Miscellaneous databases

ChiTaRSiLhfp. mouse.
NextBioi361471.
PROiQ8BM86.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BM86.
CleanExiMM_LHFP.
GenevisibleiQ8BM86. MM.

Family and domain databases

InterProiIPR019372. Lipome_HGMIC_fus_partner-like.
[Graphical view]
PfamiPF10242. L_HMGIC_fpl. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Spleen.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: 129 and C57BL/6.
    Tissue: Brain and Mammary tumor.

Entry informationi

Entry nameiLHFP_MOUSE
AccessioniPrimary (citable) accession number: Q8BM86
Secondary accession number(s): Q3T9G7, Q3TWU2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 27, 2006
Last sequence update: March 1, 2003
Last modified: May 11, 2016
This is version 80 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.