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Protein
Submitted name:

MCG16669, isoform CRA_f

Gene

Tardbp

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
MCG16669, isoform CRA_fImported
Submitted name:
TAR DNA-binding protein 43Imported
Submitted name:
TARDBP S7Imported
Submitted name:
TDP-43 variant 5Imported
Gene namesi
Name:TardbpImported
Synonyms:TARDBPImported
ORF Names:mCG_16669Imported
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 4

Organism-specific databases

MGIiMGI:2387629. Tardbp.

Expressioni

Gene expression databases

BgeeiENSMUSG00000041459.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000081142.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini104 – 200RRM (RNA recognition motif)InterPro annotationAdd BLAST97
Domaini191 – 262RRM (RNA recognition motif)InterPro annotationAdd BLAST72

Phylogenomic databases

eggNOGiENOG410IFJS. Eukaryota.
ENOG410ZYQJ. LUCA.
GeneTreeiENSGT00850000132362.
HOVERGENiHBG058671.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8BLD4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEYIRVTED ENDEPIEIPS EDDGTVLLST VTAQFPGACG LRYRNPVSQC
60 70 80 90 100
MRGVRLVEGI LHAPDAGWGN LVYVVNYPKD NKRKMDETDA SSAVKVKRAV
110 120 130 140 150
QKTSDLIVLG LPWKTTEQDL KDYFSTFGEV LMVQVKKDLK TGHSKGFGFV
160 170 180 190 200
RFTEYETQVK VMSQRHMIDG RWCDCKLPNS KQSPDEPLRS RKVFVGRCTE
210 220 230 240 250
DMTAEELQQF FCQYGEVVDV FIPKPFRAFA FVTFADDKVA QSLCGEDLII
260 270 280 290
KGISVHISNA EPKHNSNRQL ERSGRFGGNP VHLISNVYGR STSLKVVL
Length:298
Mass (Da):33,596
Last modified:March 1, 2003 - v1
Checksum:iC51638A5AF1B8BB9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606969 Genomic DNA. No translation available.
AY319514 mRNA. Translation: AAP92689.1.
GQ428776 mRNA. Translation: ACV52543.1.
AK045495 mRNA. Translation: BAC32395.1.
CH466594 Genomic DNA. Translation: EDL14835.1.
RefSeqiNP_001003898.1. NM_001003898.3.
NP_001003899.1. NM_001003899.2.
NP_001008545.1. NM_001008545.2.
NP_001008546.1. NM_001008546.2.
NP_001292354.1. NM_001305425.1.
NP_663531.1. NM_145556.4.
UniGeneiMm.22453.
Mm.378962.

Genome annotation databases

EnsembliENSMUST00000045180; ENSMUSP00000038113; ENSMUSG00000041459.
ENSMUST00000165113; ENSMUSP00000129342; ENSMUSG00000041459.
ENSMUST00000188134; ENSMUSP00000139476; ENSMUSG00000041459.
ENSMUST00000189048; ENSMUSP00000140364; ENSMUSG00000041459.
GeneIDi230908.
KEGGimmu:230908.
UCSCiuc008vvb.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL606969 Genomic DNA. No translation available.
AY319514 mRNA. Translation: AAP92689.1.
GQ428776 mRNA. Translation: ACV52543.1.
AK045495 mRNA. Translation: BAC32395.1.
CH466594 Genomic DNA. Translation: EDL14835.1.
RefSeqiNP_001003898.1. NM_001003898.3.
NP_001003899.1. NM_001003899.2.
NP_001008545.1. NM_001008545.2.
NP_001008546.1. NM_001008546.2.
NP_001292354.1. NM_001305425.1.
NP_663531.1. NM_145556.4.
UniGeneiMm.22453.
Mm.378962.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000081142.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000045180; ENSMUSP00000038113; ENSMUSG00000041459.
ENSMUST00000165113; ENSMUSP00000129342; ENSMUSG00000041459.
ENSMUST00000188134; ENSMUSP00000139476; ENSMUSG00000041459.
ENSMUST00000189048; ENSMUSP00000140364; ENSMUSG00000041459.
GeneIDi230908.
KEGGimmu:230908.
UCSCiuc008vvb.2. mouse.

Organism-specific databases

CTDi23435.
MGIiMGI:2387629. Tardbp.

Phylogenomic databases

eggNOGiENOG410IFJS. Eukaryota.
ENOG410ZYQJ. LUCA.
GeneTreeiENSGT00850000132362.
HOVERGENiHBG058671.

Miscellaneous databases

ChiTaRSiTardbp. mouse.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000041459.

Family and domain databases

Gene3Di3.30.70.330. 2 hits.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 2 hits.
[Graphical view]
SMARTiSM00360. RRM. 2 hits.
[Graphical view]
SUPFAMiSSF54928. SSF54928. 1 hit.
PROSITEiPS50102. RRM. 2 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ8BLD4_MOUSE
AccessioniPrimary (citable) accession number: Q8BLD4
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: November 30, 2016
This is version 125 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.