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Q8BKG0 (Q8BKG0_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 67. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Transporter RuleBase RU003732
Gene names
Name:Slc6a11 MGI 95630
Synonyms:Gabt4 MGI 95630
OrganismMus musculus (Mouse) EMBL BAC35326.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length586 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Belongs to the sodium:neurotransmitter symporter (SNF) family. RuleBase RU003732

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAC35326.1

Sequences

Sequence LengthMass (Da)Tools
Q8BKG0 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 78EB41F1A9EB1A38

FASTA58666,065
        10         20         30         40         50         60 
VHERGHWNNK VEFVLSVAGE IIGLGNVWRF PYLCYKNGGG AFLIPYVVFF ICCGIPVFFL 

        70         80         90        100        110        120 
ETALGQFTSE GGITCWRRVC PLFEGIGYAT QVIEAHLNVY YIIILAWAIF YLSNCFTTEL 

       130        140        150        160        170        180 
PWATCGHEWN TEKCVEFQKL NFSNYSHVSL QNATSPVMEF WERRVLAISD GIEHIGNLRW 

       190        200        210        220        230        240 
ELALCLLAAW TICYFCIWKG TKSTGKVVYV TATFPYIMLL ILLIRGVTLP GASEGIKFYL 

       250        260        270        280        290        300 
YPDLSRLSDP QVWVDAGTQI FFSYAICLGC LTALGSYNNY NNNCYRDCIM LCCLNSGTSF 

       310        320        330        340        350        360 
VAGFAIFSVL GFMAYEQGVP IAEVAESGPG LAFIAYPKAV TMMPLSPLWA TLFFMMLIFL 

       370        380        390        400        410        420 
GLDSQFVCVE SLVTAVVDMY PKVFRRGYRR ELLILALSII SYFLGLVMLT EGGMYIFQLF 

       430        440        450        460        470        480 
DSYAASGMCL LFVAIFECVC IGWVYGSNRF YDNIEDMIGY RPLSLIKWCW KVVTPGICAG 

       490        500        510        520        530        540 
IFIFFLVKYK PLKYNNVYTY PAWGYGIGWL MALSSMLCIP LWIFIKLWKT EGTLPEKLQK 

       550        560        570        580 
LTVPSADLKM RGKLGASPRT VTVNDCEAKV KGDGTISAIT EKETHF

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC35326.1.
Tissue: Eyeball EMBL BAC35326.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK053261 mRNA. Translation: BAC35326.1.
IPIIPI00136867.
UniGeneMm.44683.
Mm.448312.

3D structure databases

ProteinModelPortalQ8BKG0.
ModBaseSearch...

Protein-protein interaction databases

STRINGQ8BKG0.

Proteomic databases

PRIDEQ8BKG0.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Organism-specific databases

MGIMGI:95630. Slc6a11.

Phylogenomic databases

HOVERGENHBG071421.
InParanoidQ8BKG0.

Gene expression databases

ArrayExpressQ8BKG0.
BgeeQ8BKG0.
GenevestigatorQ8BKG0.

Family and domain databases

InterProIPR000175. Na/ntran_symport.
IPR002982. Na/ntran_symport_GABA_GAT3.
[Graphical view]
PANTHERPTHR11616. PTHR11616. 1 hit.
PfamPF00209. SNF. 1 hit.
[Graphical view]
PRINTSPR01197. GAT3TRNSPORT.
PR00176. NANEUSMPORT.
PROSITEPS00610. NA_NEUROTRAN_SYMP_1. 1 hit.
PS00754. NA_NEUROTRAN_SYMP_2. 1 hit.
PS50267. NA_NEUROTRAN_SYMP_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

SOURCESearch...

Entry information

Entry nameQ8BKG0_MOUSE
AccessionPrimary (citable) accession number: Q8BKG0
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: April 3, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info