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Q8BK55 (Q8BK55_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified March 19, 2014. Version 68. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
OrganismMus musculus (Mouse) EMBL BAC36305.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length458 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAC36305.1

Sequences

Sequence LengthMass (Da)Tools
Q8BK55 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: C5B8486DF5FD566F

FASTA45848,849
        10         20         30         40         50         60 
NEGAPPEDKV VPSLLVADHA ESSAVRGGVG GAMLKEGMKG SSSASVTKGQ HELSEVDGRW 

        70         80         90        100        110        120 
EEHRSLLTAG ATHHVRTAGT IAANEAVRTR ATGSSRDMSG ARGAVAVNEE FLRSYFTEKA 

       130        140        150        160        170        180 
ASYNGEDDLH MAKDCLLVYS QEDTASLRGS VGCCSFIEGE LDDLFLDDLG LKFKTLAEVC 

       190        200        210        220        230        240 
LGRKIDLDVD IEQRQKPVRE ASVSAASGSH YEQAVTSSES AYSSNTGFPA PKPLHEVHTE 

       250        260        270        280        290        300 
KVTQEIVTES SVSSRQSQKV VPPPDPVASG NIIVTETSYA KGSAVPPSTV LLAPRQPQSL 

       310        320        330        340        350        360 
IVTERVYAPT STLVDQHYAN EEKVLVTERV IQPNGGIPKP LEVTQHLKDA QYVMVRERES 

       370        380        390        400        410        420 
ILAPSSGVQP TLAMPSVAAG GQNVTVTERI LTPASTLQSS YQIPSETSIT ARNTVLSSVG 

       430        440        450 
SIGPLPNLDL EESDRPNSTI TTSSTRVTKH STMQHSYS 

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[5]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[6]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[7]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
[8]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC36305.1.
Tissue: Skin EMBL BAC36305.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AK076345 mRNA. Translation: BAC36305.1.
UniGeneMm.345891.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Phylogenomic databases

InParanoidQ8BK55.

Gene expression databases

ArrayExpressQ8BK55.
BgeeQ8BK55.
GenevestigatorQ8BK55.

Family and domain databases

Gene3D4.10.900.10. 1 hit.
InterProIPR000233. Cadherin_cytoplasmic-dom.
IPR027397. Catenin_binding_dom.
IPR009123. Desmoglein.
IPR009122. Desmosomal_cadherin.
[Graphical view]
PANTHERPTHR24025. PTHR24025. 1 hit.
PfamPF01049. Cadherin_C. 1 hit.
[Graphical view]
PRINTSPR01818. DESMOCADHERN.
PR01819. DESMOGLEIN.
ProtoNetSearch...

Other

ChiTaRSDSG2. mouse.

Entry information

Entry nameQ8BK55_MOUSE
AccessionPrimary (citable) accession number: Q8BK55
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: March 19, 2014
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)