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Q8BJZ4 (RT35_MOUSE) Reviewed, UniProtKB/Swiss-Prot

Last modified May 1, 2013. Version 65. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
28S ribosomal protein S35, mitochondrial
Short name=MRP-S35
Short name=S35mt
Gene names
Name:Mrps35
OrganismMus musculus (Mouse) [Reference proteome]
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existenceEvidence at transcript level

General annotation (Comments)

Subunit structure

Component of the mitochondrial ribosome small subunit (28S) which comprises a 12S rRNA and about 30 distinct proteins By similarity. UniProtKB Q2YDF6

Subcellular location

Mitochondrion By similarity UniProtKB Q2YDF6.

Sequence caution

The sequence AAH19964.1 differs from that shown. Reason: Erroneous initiation.

Ontologies

Keywords
   Cellular componentMitochondrion
   DomainTransit peptide
   Molecular functionRibonucleoprotein
Ribosomal protein
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentmitochondrial small ribosomal subunit

Inferred from sequence or structural similarity. Source: UniProtKB

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Transit peptide1 – ?Mitochondrion Potential
Chain? – 32028S ribosomal protein S35, mitochondrialPRO_0000046056

Experimental info

Sequence conflict111S → T in BAC36950. Ref.1
Sequence conflict111S → T in BAE41824. Ref.1
Sequence conflict161P → A in BAC36950. Ref.1
Sequence conflict161P → A in BAE41824. Ref.1
Sequence conflict2161Y → C in BAC36950. Ref.1
Sequence conflict2161Y → C in BAE41824. Ref.1
Sequence conflict2931V → I in BAC36950. Ref.1
Sequence conflict2931V → I in BAE41824. Ref.1

Sequences

Sequence LengthMass (Da)Tools
Q8BJZ4 [UniParc].

Last modified February 7, 2006. Version 2.
Checksum: 83A35D706DFB806E

FASTA32035,975
        10         20         30         40         50         60 
MAAAALQLRQ SLCPGPRVLR TFSSVASPAA PRAGPRTASR SERPMRRKAL PPRTEKMDTD 

        70         80         90        100        110        120 
QDWPSVYPTA APFKPSAVPL PVRMGYPVKK GVPMAKEGNL ELLKIPNFLH LTPVAIKRHC 

       130        140        150        160        170        180 
AALKDFCTEW PAALDSDEKC EEHFPVEIDT ADYVSSGPSI RNPKARAVTL RVKLSSLNLD 

       190        200        210        220        230        240 
NHAKKKLIKL VGERYCKATD VLTITTDRCP LKRQNYDYAV YLLTVLYHES WKTEDWENSK 

       250        260        270        280        290        300 
TEEDMDEYVW AKSSSENSVL QTLLQMRAAE SSVAPSREEL LGTKEVEDYQ KCVVRLKNEG 

       310        320 
ENEASLAQYK ESVKRLLNLA

« Hide

References

[1]"The transcriptional landscape of the mammalian genome."
Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. expand/collapse author list , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C57BL/6J and NOD.
Tissue: Embryo.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J.
[3]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 4-320.
Strain: FVB/N.
Tissue: Liver.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK077677 mRNA. Translation: BAC36950.1.
AK170480 mRNA. Translation: BAE41824.1.
CU207396 Genomic DNA. Translation: CAQ51866.1.
BC019964 mRNA. Translation: AAH19964.1. Different initiation.
IPIIPI00222538.
RefSeqNP_663548.2. NM_145573.2.
UniGeneMm.46656.

3D structure databases

ModBaseSearch...

Protein-protein interaction databases

STRING10090.ENSMUSP00000048348.

PTM databases

PhosphoSiteQ8BJZ4.

Proteomic databases

PaxDbQ8BJZ4.
PRIDEQ8BJZ4.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000036111; ENSMUSP00000048348; ENSMUSG00000040112.
GeneID232536.
KEGGmmu:232536.
UCSCuc009ess.1. mouse.

Organism-specific databases

CTD60488.
MGIMGI:2385255. Mrps35.

Phylogenomic databases

eggNOGNOG267668.
GeneTreeENSGT00390000003443.
HOGENOMHOG000045127.
HOVERGENHBG082941.
InParanoidB2KFS5.
OrthoDBEOG4W0XDM.

Gene expression databases

BgeeQ8BJZ4.
CleanExMM_MRPS35.
GenevestigatorQ8BJZ4.
GermOnlineENSMUSG00000040112. Mus musculus.

Family and domain databases

InterProIPR019349. Ribosomal_S24/S35_mit.
[Graphical view]
PfamPF10213. MRP-S28. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio381143.
SOURCESearch...

Entry information

Entry nameRT35_MOUSE
AccessionPrimary (citable) accession number: Q8BJZ4
Secondary accession number(s): B2KFS5, Q8VCG7
Entry history
Integrated into UniProtKB/Swiss-Prot: February 7, 2006
Last sequence update: February 7, 2006
Last modified: May 1, 2013
This is version 65 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

MGD cross-references

Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot

to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·Documents