ID SMAL1_MOUSE Reviewed; 910 AA. AC Q8BJL0; Q3TEQ9; Q3U4W0; Q3V3A8; Q8BVK7; Q8BXW4; Q8K309; Q9EQK8; Q9QYC4; DT 01-MAR-2005, integrated into UniProtKB/Swiss-Prot. DT 01-MAR-2003, sequence version 1. DT 27-MAR-2024, entry version 157. DE RecName: Full=SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1; DE EC=3.6.4.-; DE AltName: Full=HepA-related protein; DE Short=mharp; DE AltName: Full=Sucrose nonfermenting protein 2-like 1; GN Name=Smarcal1; Synonyms=Harp; OS Mus musculus (Mouse). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; OC Murinae; Mus; Mus. OX NCBI_TaxID=10090; RN [1] RP NUCLEOTIDE SEQUENCE [GENOMIC DNA / MRNA] (ISOFORM 1), AND TISSUE RP SPECIFICITY. RX PubMed=10857751; DOI=10.1006/geno.2000.6174; RA Coleman M.A., Eisen J.A., Mohrenweiser H.W.; RT "Cloning and characterization of HARP/SMARCAL1: a prokaryotic HepA-related RT SNF2 helicase protein from human and mouse."; RL Genomics 65:274-282(2000). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2; 3 AND 4). RC STRAIN=C57BL/6J, and NOD; RC TISSUE=Cerebellum, Embryo, Testis, and Thymus; RX PubMed=16141072; DOI=10.1126/science.1112014; RA Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., RA Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., RA Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J., RA Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., RA Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., RA Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., RA Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., RA Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., RA Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., RA Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., RA Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., RA Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., RA Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., RA Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., RA Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., RA Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., RA Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., RA Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., RA Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., RA Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., RA Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., RA Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., RA Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., RA Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., RA Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., RA van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., RA Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., RA Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., RA Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., RA Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., RA Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., RA Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., RA Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., RA Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.; RT "The transcriptional landscape of the mammalian genome."; RL Science 309:1559-1563(2005). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). RC STRAIN=Czech II; TISSUE=Mammary gland; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [4] RP IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Brain, Lung, and Spleen; RX PubMed=21183079; DOI=10.1016/j.cell.2010.12.001; RA Huttlin E.L., Jedrychowski M.P., Elias J.E., Goswami T., Rad R., RA Beausoleil S.A., Villen J., Haas W., Sowa M.E., Gygi S.P.; RT "A tissue-specific atlas of mouse protein phosphorylation and expression."; RL Cell 143:1174-1189(2010). CC -!- FUNCTION: ATP-dependent annealing helicase that binds selectively to CC fork DNA relative to ssDNA or dsDNA and catalyzes the rewinding of the CC stably unwound DNA. Rewinds single-stranded DNA bubbles that are stably CC bound by replication protein A (RPA). Acts throughout the genome to CC reanneal stably unwound DNA, performing the opposite reaction of many CC enzymes, such as helicases and polymerases, that unwind DNA. May play CC an important role in DNA damage response by acting at stalled CC replication forks (By similarity). {ECO:0000250}. CC -!- SUBUNIT: Interacts with RPA2; the interaction is direct and mediates CC the recruitment by the RPA complex of SMARCAL1 to sites of DNA damage. CC {ECO:0000250}. CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000250}. Note=Recruited to damaged CC DNA regions. {ECO:0000250}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=4; CC Name=1; CC IsoId=Q8BJL0-1; Sequence=Displayed; CC Name=2; CC IsoId=Q8BJL0-2; Sequence=VSP_012919, VSP_012920; CC Name=3; CC IsoId=Q8BJL0-3; Sequence=VSP_036218, VSP_036219; CC Name=4; CC IsoId=Q8BJL0-4; Sequence=VSP_036216, VSP_036217; CC -!- TISSUE SPECIFICITY: Ubiquitously expressed, with high levels in brain, CC heart, kidney, liver and testis. {ECO:0000269|PubMed:10857751}. CC -!- PTM: DNA damage-regulated phosphorylation by kinases that may include CC ATM, ATR and PRKDC. {ECO:0000250}. CC -!- MISCELLANEOUS: [Isoform 2]: May be due to an intron retention. CC {ECO:0000305}. CC -!- SIMILARITY: Belongs to the SNF2/RAD54 helicase family. SMARCAL1 CC subfamily. {ECO:0000255|PROSITE-ProRule:PRU00800}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; AF088884; AAF24985.1; -; mRNA. DR EMBL; AF209773; AAG47648.1; -; Genomic_DNA. DR EMBL; AK042332; BAE20630.1; -; mRNA. DR EMBL; AK043129; BAC31469.1; -; mRNA. DR EMBL; AK077878; BAC37047.1; -; mRNA. DR EMBL; AK083488; BAC38933.1; -; mRNA. DR EMBL; AK154020; BAE32320.1; -; mRNA. DR EMBL; AK169465; BAE41189.1; -; mRNA. DR EMBL; BC029078; AAH29078.1; -; mRNA. DR CCDS; CCDS35609.1; -. [Q8BJL0-1] DR RefSeq; NP_061287.2; NM_018817.2. [Q8BJL0-1] DR RefSeq; XP_006496204.1; XM_006496141.3. [Q8BJL0-1] DR RefSeq; XP_006496205.1; XM_006496142.3. [Q8BJL0-1] DR RefSeq; XP_006496206.1; XM_006496143.3. [Q8BJL0-1] DR RefSeq; XP_006496207.1; XM_006496144.1. [Q8BJL0-1] DR PDB; 4O66; X-ray; 1.90 A; A/B/C/D=197-268. DR PDBsum; 4O66; -. DR AlphaFoldDB; Q8BJL0; -. DR SMR; Q8BJL0; -. DR BioGRID; 207633; 7. DR STRING; 10090.ENSMUSP00000047589; -. DR iPTMnet; Q8BJL0; -. DR PhosphoSitePlus; Q8BJL0; -. DR EPD; Q8BJL0; -. DR MaxQB; Q8BJL0; -. DR PaxDb; 10090-ENSMUSP00000047589; -. DR PeptideAtlas; Q8BJL0; -. DR ProteomicsDB; 261515; -. [Q8BJL0-1] DR ProteomicsDB; 261516; -. [Q8BJL0-2] DR ProteomicsDB; 261517; -. [Q8BJL0-3] DR ProteomicsDB; 261518; -. [Q8BJL0-4] DR Pumba; Q8BJL0; -. DR Antibodypedia; 34237; 221 antibodies from 31 providers. DR DNASU; 54380; -. DR Ensembl; ENSMUST00000047615.15; ENSMUSP00000047589.9; ENSMUSG00000039354.17. [Q8BJL0-1] DR Ensembl; ENSMUST00000152225.2; ENSMUSP00000137833.2; ENSMUSG00000039354.17. [Q8BJL0-1] DR GeneID; 54380; -. DR KEGG; mmu:54380; -. DR UCSC; uc007bko.2; mouse. [Q8BJL0-4] DR UCSC; uc007bkq.2; mouse. [Q8BJL0-3] DR UCSC; uc007bkr.2; mouse. [Q8BJL0-2] DR UCSC; uc007bks.2; mouse. [Q8BJL0-1] DR AGR; MGI:1859183; -. DR CTD; 50485; -. DR MGI; MGI:1859183; Smarcal1. DR VEuPathDB; HostDB:ENSMUSG00000039354; -. DR eggNOG; KOG1000; Eukaryota. DR GeneTree; ENSGT00940000157608; -. DR HOGENOM; CLU_000315_33_1_1; -. DR InParanoid; Q8BJL0; -. DR OMA; WNFSMAD; -. DR OrthoDB; 318617at2759; -. DR PhylomeDB; Q8BJL0; -. DR TreeFam; TF106474; -. DR BioGRID-ORCS; 54380; 3 hits in 80 CRISPR screens. DR ChiTaRS; Smarcal1; mouse. DR PRO; PR:Q8BJL0; -. DR Proteomes; UP000000589; Chromosome 1. DR RNAct; Q8BJL0; Protein. DR Bgee; ENSMUSG00000039354; Expressed in primary oocyte and 256 other cell types or tissues. DR ExpressionAtlas; Q8BJL0; baseline and differential. DR GO; GO:0005662; C:DNA replication factor A complex; IEA:Ensembl. DR GO; GO:0043596; C:nuclear replication fork; IBA:GO_Central. DR GO; GO:0005654; C:nucleoplasm; ISO:MGI. DR GO; GO:0005634; C:nucleus; ISS:UniProtKB. DR GO; GO:0035861; C:site of double-strand break; ISS:UniProtKB. DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW. DR GO; GO:0008094; F:ATP-dependent activity, acting on DNA; IDA:MGI. DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IEA:InterPro. DR GO; GO:0036310; F:ATP-dependent DNA/DNA annealing activity; ISS:UniProtKB. DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW. DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW. DR GO; GO:0006974; P:DNA damage response; ISS:UniProtKB. DR GO; GO:0006281; P:DNA repair; IBA:GO_Central. DR GO; GO:0006303; P:double-strand break repair via nonhomologous end joining; ISO:MGI. DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; ISS:UniProtKB. DR GO; GO:0031297; P:replication fork processing; ISS:UniProtKB. DR CDD; cd18010; DEXHc_HARP_SMARCAL1; 1. DR CDD; cd18793; SF2_C_SNF; 1. DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1. DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1. DR InterPro; IPR010003; HARP_dom. DR InterPro; IPR014001; Helicase_ATP-bd. DR InterPro; IPR001650; Helicase_C. DR InterPro; IPR027417; P-loop_NTPase. DR InterPro; IPR038718; SNF2-like_sf. DR InterPro; IPR049730; SNF2/RAD54-like_C. DR InterPro; IPR000330; SNF2_N. DR PANTHER; PTHR45766; DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER; 1. DR PANTHER; PTHR45766:SF3; SWI_SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY A-LIKE PROTEIN 1; 1. DR Pfam; PF07443; HARP; 2. DR Pfam; PF00271; Helicase_C; 1. DR Pfam; PF00176; SNF2-rel_dom; 1. DR SMART; SM00487; DEXDc; 1. DR SMART; SM00490; HELICc; 1. DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2. DR PROSITE; PS51467; HARP; 2. DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1. DR PROSITE; PS51194; HELICASE_CTER; 1. DR Genevisible; Q8BJL0; MM. PE 1: Evidence at protein level; KW 3D-structure; Acetylation; Alternative splicing; ATP-binding; Coiled coil; KW Helicase; Hydrolase; Nucleotide-binding; Nucleus; Phosphoprotein; KW Reference proteome; Repeat. FT INIT_MET 1 FT /note="Removed" FT /evidence="ECO:0000250|UniProtKB:Q9NZC9" FT CHAIN 2..910 FT /note="SWI/SNF-related matrix-associated actin-dependent FT regulator of chromatin subfamily A-like protein 1" FT /id="PRO_0000074349" FT DOMAIN 199..269 FT /note="HARP 1" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00800" FT DOMAIN 286..357 FT /note="HARP 2" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00800" FT DOMAIN 404..559 FT /note="Helicase ATP-binding" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT DOMAIN 674..827 FT /note="Helicase C-terminal" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00542" FT REGION 1..198 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 2..29 FT /note="Mediates interaction with RPA2" FT /evidence="ECO:0000250" FT REGION 868..896 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COILED 3..34 FT /evidence="ECO:0000255" FT MOTIF 508..511 FT /note="DESH box" FT COMPBIAS 7..26 FT /note="Basic and acidic residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 30..54 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 66..112 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 123..147 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT BINDING 417..424 FT /ligand="ATP" FT /ligand_id="ChEBI:CHEBI:30616" FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00541" FT MOD_RES 2 FT /note="N-acetylserine" FT /evidence="ECO:0000250|UniProtKB:Q9NZC9" FT MOD_RES 118 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q9NZC9" FT MOD_RES 165 FT /note="Phosphoserine" FT /evidence="ECO:0000250|UniProtKB:Q9NZC9" FT VAR_SEQ 404 FT /note="S -> R (in isoform 4)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_036216" FT VAR_SEQ 405..910 FT /note="Missing (in isoform 4)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_036217" FT VAR_SEQ 508..574 FT /note="DESHFLKNIKTARCRAAVPILKVAKRVILLSGTPAMSRPAELYTQIIAVKPT FT FFPQFHAFGLRYCDA -> VSNGIALKYFVCLDTRKGSTDLGICVLLGPLWALRREGNR FT NRCLSFIENDFFIPFLKQPLSLCARLS (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_036218" FT VAR_SEQ 575..910 FT /note="Missing (in isoform 3)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_036219" FT VAR_SEQ 769..788 FT /note="LIQAEDRVHRIGQTNSVSIH -> GNVARVPLGMPRAEKYKIRK (in FT isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_012919" FT VAR_SEQ 789..910 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:16141072" FT /id="VSP_012920" FT CONFLICT 35 FT /note="A -> T (in Ref. 3; AAH29078)" FT /evidence="ECO:0000305" FT CONFLICT 78 FT /note="F -> L (in Ref. 3; AAH29078)" FT /evidence="ECO:0000305" FT CONFLICT 529 FT /note="K -> N (in Ref. 2; BAE32320)" FT /evidence="ECO:0000305" FT CONFLICT 685 FT /note="K -> R (in Ref. 2; BAC31469)" FT /evidence="ECO:0000305" FT CONFLICT 717..725 FT /note="Missing (in Ref. 1; AAG47648)" FT /evidence="ECO:0000305" FT CONFLICT 717 FT /note="T -> R (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT CONFLICT 719..721 FT /note="SAD -> TRA (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT CONFLICT 724..725 FT /note="AQ -> LK (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT CONFLICT 743 FT /note="T -> P (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT CONFLICT 834 FT /note="D -> A (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT CONFLICT 834 FT /note="Missing (in Ref. 1; AAG47648)" FT /evidence="ECO:0000305" FT CONFLICT 866..868 FT /note="LGS -> IKN (in Ref. 1; AAF24985)" FT /evidence="ECO:0000305" FT STRAND 203..210 FT /evidence="ECO:0007829|PDB:4O66" FT STRAND 213..218 FT /evidence="ECO:0007829|PDB:4O66" FT HELIX 222..230 FT /evidence="ECO:0007829|PDB:4O66" FT STRAND 235..237 FT /evidence="ECO:0007829|PDB:4O66" FT TURN 238..241 FT /evidence="ECO:0007829|PDB:4O66" FT STRAND 242..246 FT /evidence="ECO:0007829|PDB:4O66" FT HELIX 247..249 FT /evidence="ECO:0007829|PDB:4O66" FT HELIX 250..257 FT /evidence="ECO:0007829|PDB:4O66" FT STRAND 263..266 FT /evidence="ECO:0007829|PDB:4O66" SQ SEQUENCE 910 AA; 100840 MW; F6B28F847BD6FC18 CRC64; MSLPLTEEQR KKIEENRQKA LARRAEKLSE QPQSAASGSS AAGPSQSKQG SLLNLLAEPS KPVGHASIFK QQNLSNSFPT DQRPHSSRCS QPSPAEETTG LWKTQGEMST ACPKPNPSPP GASNQPLLGY KSSEGQPQAT WDTGASSSGP FPRDPELEAK AARPSTSRQS ISDSFYVLGG KTPRTEGRPP NILQTTPQNT GFLRGACIKT GDRFRVKIGY NQELIAVFKS LPSRHYDSFT KTWDFSMSDY RALMKAVERL STVSLKPLDE AGGSVGGQTS LPSAPSLTFV TGKCMLISRV RFEVDIGYSE AVIGLFKQME SRSYDIKTRK WSFLLEEHNK LIARSRELKQ VQLDPLPKTV TLAFASQLEK TSPKLKADVP EADLSGVDAK LVSSLMPFQR EGVSFAISKR GRLLLADDMG LGKTVQAICI AAFYRKEWPL LVVVPSSVRF TWEQAFLRWL PSLSPENINV VVTGKGRLTA GLVNIVSFDL LCKLERQLKT PFKVVIIDES HFLKNIKTAR CRAAVPILKV AKRVILLSGT PAMSRPAELY TQIIAVKPTF FPQFHAFGLR YCDAKRLPWG WDYSGSSNLG ELKLLLEEAI MLRRLKSDVL SQLPAKQRKM VVVNPGRISS RAKAALDAAA KEMTKDKTKQ QQKEALLVFF NRTAEAKIPC VVEYILDLLD SGREKFLVFA HHKVILDAVA KELERKNVQH IRIDGSTPSA DREAQCQRFQ LSKGHTVALL SITAANMGLT FSTADLVVFA ELFWNPGVLI QAEDRVHRIG QTNSVSIHYL VAKGTADDYL WPLIQEKIKV LGEAGLSETN FSEMTEATDY VHKDPKQKTI YDLFQQSFED DGNDMEFLEA AESFELGSTS GTSGNISQDL GDLLDEDEGS PPKKSRFEFF DNWDSFSSPF //