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Q8BGP4 (Q8BGP4_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 83. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesSubmitted name:
Putative uncharacterized protein EMBL BAC32062.1
Gene names
Name:Adamts5 MGI 1346321
OrganismMus musculus (Mouse) EMBL BAC32062.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus › Mus

Protein attributes

Sequence length623 AA.
Sequence statusFragment.
Protein existenceEvidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 peptidase M12B domain. SAAS SAAS001590

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Experimental info

Non-terminal residue11 EMBL BAC32062.1

Sequences

Sequence LengthMass (Da)Tools
Q8BGP4 [UniParc].

Last modified March 1, 2003. Version 1.
Checksum: 80CE9BCD0AC37502

FASTA62368,681
        10         20         30         40         50         60 
ENHIRLAVVK VVVLTDKDTS LEVSKNAATT LKNFCKWQHQ HNQLGDDHEE HYDAAILFTR 

        70         80         90        100        110        120 
EDLCGHHSCD TLGMADVGTI CSPERSCAVI EDDGLHAAFT VAHEIGHLLG LSHDDSKFCE 

       130        140        150        160        170        180 
ENFGTTEDKR LMSSILTSID ASKPWSKCTS ATITEFLDDG HGNCLLDLPR KQILGPEELP 

       190        200        210        220        230        240 
GQTYDATQQC NLTFGPEYSV CPGMDVCARL WCAVVRQGQM VCLTKKLPAV EGTPCGKGRV 

       250        260        270        280        290        300 
CLQGKCVDKT KKKYYSTSSH GNWGSWGPWG QCSRSCGGGV QFAYRHCNNP APRNSGRYCT 

       310        320        330        340        350        360 
GKRAIYRSCS VTPCPPNGKS FRHEQCEAKN GYQSDAKGVK TFVEWVPKYA GVLPADVCKL 

       370        380        390        400        410        420 
TCRAKGTGYY VVFSPKVTDG TECRPYSNSV CVRGRCVRTG CDGIIGSKLQ YDKCGVCGGD 

       430        440        450        460        470        480 
NSSCTKIIGT FNKKSKGYTD VVRIPEGATH IKVRQFKAKD QTRFTAYLAL KKKTGEYLIN 

       490        500        510        520        530        540 
GKYMISTSET IIDINGTVMN YSGWSHRDDF LHGMGYSATK EILIVQILAT DPTKALDVRY 

       550        560        570        580        590        600 
SFFVPKKTTQ KVNSVISHGS NKVGPHSTQL QWVTGPWLAC SRTCDTGWHT RTVQCQDGNR 

       610        620 
KLAKGCLLSQ RPSAFKQCLL KKC

« Hide

References

[1]"High-efficiency full-length cDNA cloning."
Carninci P., Hayashizaki Y.
Methods Enzymol. 303:19-44(1999) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[2]"Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes."
Carninci P., Shibata Y., Hayatsu N., Sugahara Y., Shibata K., Itoh M., Konno H., Okazaki Y., Muramatsu M., Hayashizaki Y.
Genome Res. 10:1617-1630(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[3]"RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer."
Shibata K., Itoh M., Aizawa K., Nagaoka S., Sasaki N., Carninci P., Konno H., Akiyama J., Nishi K., Kitsunai T., Tashiro H., Itoh M., Sumi N., Ishii Y., Nakamura S., Hazama M., Nishine T., Harada A. expand/collapse author list , Yamamoto R., Matsumoto H., Sakaguchi S., Ikegami T., Kashiwagi K., Fujiwake S., Inoue K., Togawa Y., Izawa M., Ohara E., Watahiki M., Yoneda Y., Ishikawa T., Ozawa K., Tanaka T., Matsuura S., Kawai J., Okazaki Y., Muramatsu M., Inoue Y., Kira A., Hayashizaki Y.
Genome Res. 10:1757-1771(2000) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[4]"Functional annotation of a full-length mouse cDNA collection."
The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium
Nature 409:685-690(2001)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[5]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (JUL-2001) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Retina EMBL BAC32062.1.
[6]"Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs."
The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team
Nature 420:563-573(2002)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[7]Adachi J., Aizawa K., Akimura T., Arakawa T., Bono H., Carninci P., Fukuda S., Furuno M., Hanagaki T., Hara A., Hashizume W., Hayashida K., Hayatsu N., Hiramoto K., Hiraoka T., Hirozane T., Hori F., Imotani K. expand/collapse author list , Ishii Y., Itoh M., Kagawa I., Kasukawa T., Katoh H., Kawai J., Kojima Y., Kondo S., Konno H., Kouda M., Koya S., Kurihara C., Matsuyama T., Miyazaki A., Murata M., Nakamura M., Nishi K., Nomura K., Numazaki R., Ohno M., Ohsato N., Okazaki Y., Saito R., Saitoh H., Sakai C., Sakai K., Sakazume N., Sano H., Sasaki D., Shibata K., Shinagawa A., Shiraki T., Sogabe Y., Tagami M., Tagawa A., Takahashi F., Takaku-Akahira S., Takeda Y., Tanaka T., Tomaru A., Toya T., Yasunishi A., Muramatsu M., Hayashizaki Y.
Submitted (APR-2002) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC38503.1.
Tissue: Cerebellum EMBL BAC38503.1.
[8]"The Transcriptional Landscape of the Mammalian Genome."
The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group)
Science 309:1559-1563(2005)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
[9]"Antisense Transcription in the Mammalian Transcriptome."
RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium
Science 309:1564-1566(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: C57BL/6J EMBL BAC32062.1.
Tissue: Cerebellum EMBL BAC38503.1 and Retina EMBL BAC32062.1.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AK044746 mRNA. Translation: BAC32062.1.
AK082475 mRNA. Translation: BAC38503.1.
IPIIPI00126724.
RefSeqNP_035912.2. NM_011782.2.
UniGeneMm.112933.
Mm.437478.

3D structure databases

HSSPHSSP built from PDB template 1LSL based on UniProtKB P07996.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID23794.
KEGGmmu:23794.

Organism-specific databases

CTD11096.
MGIMGI:1346321. Adamts5.

Phylogenomic databases

HOVERGENHBG004313.
InParanoidQ8BGP4.
KOK08620.

Gene expression databases

GenevestigatorQ8BGP4.

Family and domain databases

Gene3D3.40.390.10. 1 hit.
InterProIPR010294. ADAM_spacer1.
IPR024079. MetalloPept_cat_dom.
IPR001590. Peptidase_M12B.
IPR013273. Peptidase_M12B_ADAM-TS.
IPR000884. Thrombospondin_1_rpt.
[Graphical view]
PfamPF05986. ADAM_spacer1. 1 hit.
PF01421. Reprolysin. 1 hit.
PF00090. TSP_1. 2 hits.
[Graphical view]
PRINTSPR01857. ADAMTSFAMILY.
SMARTSM00209. TSP1. 2 hits.
[Graphical view]
SUPFAMSSF82895. TSP1. 2 hits.
PROSITEPS50215. ADAM_MEPRO. 1 hit.
PS50092. TSP1. 2 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio303403.
SOURCESearch...

Entry information

Entry nameQ8BGP4_MOUSE
AccessionPrimary (citable) accession number: Q8BGP4
Entry history
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: April 3, 2013
This is version 83 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info