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Protein

Solute carrier family 35 member F1

Gene

Slc35f1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Putative solute transporter.Curated

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 35 member F1
Gene namesi
Name:Slc35f1
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 10

Organism-specific databases

MGIiMGI:2139810. Slc35f1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei60 – 8021HelicalSequence analysisAdd
BLAST
Transmembranei94 – 11421HelicalSequence analysisAdd
BLAST
Transmembranei129 – 14719HelicalSequence analysisAdd
BLAST
Transmembranei159 – 17921HelicalSequence analysisAdd
BLAST
Transmembranei186 – 20621HelicalSequence analysisAdd
BLAST
Transmembranei221 – 24121HelicalSequence analysisAdd
BLAST
Transmembranei247 – 26721HelicalSequence analysisAdd
BLAST
Transmembranei284 – 30421HelicalSequence analysisAdd
BLAST
Transmembranei311 – 33121HelicalSequence analysisAdd
BLAST
Transmembranei335 – 35521HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 408408Solute carrier family 35 member F1PRO_0000307308Add
BLAST

Proteomic databases

MaxQBiQ8BGK5.
PaxDbiQ8BGK5.
PRIDEiQ8BGK5.

PTM databases

iPTMnetiQ8BGK5.
PhosphoSiteiQ8BGK5.

Expressioni

Gene expression databases

BgeeiQ8BGK5.
CleanExiMM_SLC35F1.
GenevisibleiQ8BGK5. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000101113.

Structurei

3D structure databases

ProteinModelPortaliQ8BGK5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi3 – 2018Pro-richAdd
BLAST

Sequence similaritiesi

Belongs to the SLC35F solute transporter family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG2766. Eukaryota.
COG0697. LUCA.
GeneTreeiENSGT00390000015655.
HOGENOMiHOG000241333.
HOVERGENiHBG058983.
InParanoidiQ8BGK5.
KOiK15287.
OMAiTQTFFLY.
OrthoDBiEOG7PCJJB.
PhylomeDBiQ8BGK5.
TreeFamiTF313645.

Family and domain databases

InterProiIPR009262. SLC35_F1/F2/F6.
[Graphical view]
PfamiPF06027. SLC35F. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8BGK5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIPPEPPQPQ LQPPPPPAPP NHVVTTIENL PAEGSGGVSL SASSRASMRQ
60 70 80 90 100
RIRKVLNREM LISVALGQVL SLLVCGIGLT SKYLAEDFHA NTPVFQSFLN
110 120 130 140 150
YILLFLVYTT TLAVRQGEEN LLAILRRRWW KYMILGLIDL EANYLVVKAY
160 170 180 190 200
QYTTLTSVQL LDCFVIPVVI LLSWFFLLIR YKAVHFIGIV VCILGMGCMV
210 220 230 240 250
GADVLVGRHQ GAGENKLVGD LLVLGGATLY GISNVWEESI IRTLSRVEFL
260 270 280 290 300
GMIGLFGAFF SGIQLAIMEH KELLKVPWDW QIGLLYVGFS ACMFGLYSFM
310 320 330 340 350
PVVIKKTSAT SVNLSLLTAD LYSLFCGLFL FHYKFSGLYL LSFFTILIGL
360 370 380 390 400
VLYSSTSTYI AQDPRVYKQF RNPSGPVVDL PSTAQVEPSV TYTSLGQETE

EEPHVRVA
Length:408
Mass (Da):45,304
Last modified:March 1, 2003 - v1
Checksum:i8E9669BC21CF6C55
GO

Sequence cautioni

The sequence BAC37158.1 differs from that shown.Chimeric cDNA.Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti3 – 31P → S in BAC33499 (PubMed:16141072).Curated
Sequence conflicti112 – 1121L → Q in BAE38004 (PubMed:16141072).Curated
Sequence conflicti326 – 3261C → F in BAC35422 (PubMed:16141072).Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK038601 mRNA. Translation: BAC30061.1.
AK048957 mRNA. Translation: BAC33499.1.
AK053426 mRNA. Translation: BAC35383.1.
AK053545 mRNA. Translation: BAC35422.1.
AK078169 mRNA. Translation: BAC37158.1. Sequence problems.
AK083768 mRNA. Translation: BAC39016.1.
AK139331 mRNA. Translation: BAE23959.1.
AK165021 mRNA. Translation: BAE38004.1.
BC059075 mRNA. Translation: AAH59075.1.
CCDSiCCDS23843.1.
RefSeqiNP_848790.2. NM_178675.4.
UniGeneiMm.338690.

Genome annotation databases

EnsembliENSMUST00000105473; ENSMUSP00000101113; ENSMUSG00000038602.
GeneIDi215085.
KEGGimmu:215085.
UCSCiuc007fbk.2. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK038601 mRNA. Translation: BAC30061.1.
AK048957 mRNA. Translation: BAC33499.1.
AK053426 mRNA. Translation: BAC35383.1.
AK053545 mRNA. Translation: BAC35422.1.
AK078169 mRNA. Translation: BAC37158.1. Sequence problems.
AK083768 mRNA. Translation: BAC39016.1.
AK139331 mRNA. Translation: BAE23959.1.
AK165021 mRNA. Translation: BAE38004.1.
BC059075 mRNA. Translation: AAH59075.1.
CCDSiCCDS23843.1.
RefSeqiNP_848790.2. NM_178675.4.
UniGeneiMm.338690.

3D structure databases

ProteinModelPortaliQ8BGK5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000101113.

PTM databases

iPTMnetiQ8BGK5.
PhosphoSiteiQ8BGK5.

Proteomic databases

MaxQBiQ8BGK5.
PaxDbiQ8BGK5.
PRIDEiQ8BGK5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000105473; ENSMUSP00000101113; ENSMUSG00000038602.
GeneIDi215085.
KEGGimmu:215085.
UCSCiuc007fbk.2. mouse.

Organism-specific databases

CTDi222553.
MGIiMGI:2139810. Slc35f1.

Phylogenomic databases

eggNOGiKOG2766. Eukaryota.
COG0697. LUCA.
GeneTreeiENSGT00390000015655.
HOGENOMiHOG000241333.
HOVERGENiHBG058983.
InParanoidiQ8BGK5.
KOiK15287.
OMAiTQTFFLY.
OrthoDBiEOG7PCJJB.
PhylomeDBiQ8BGK5.
TreeFamiTF313645.

Miscellaneous databases

ChiTaRSiSlc35f1. mouse.
PROiQ8BGK5.
SOURCEiSearch...

Gene expression databases

BgeeiQ8BGK5.
CleanExiMM_SLC35F1.
GenevisibleiQ8BGK5. MM.

Family and domain databases

InterProiIPR009262. SLC35_F1/F2/F6.
[Graphical view]
PfamiPF06027. SLC35F. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain cortex, Cerebellum, Embryonic spinal ganglion, Eye, Hypothalamus and Olfactory bulb.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J.
    Tissue: Brain.
  3. Cited for: IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Brain.

Entry informationi

Entry nameiS35F1_MOUSE
AccessioniPrimary (citable) accession number: Q8BGK5
Secondary accession number(s): Q3TNT3
, Q8BKD4, Q8BVI2, Q8BX52
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 23, 2007
Last sequence update: March 1, 2003
Last modified: June 8, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.