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Protein
Submitted name:

MCG13402, isoform CRA_a

Gene

Ptbp1

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingPROSITE-ProRule annotation

Enzyme and pathway databases

ReactomeiR-MMU-6803529. FGFR2 alternative splicing.
R-MMU-72163. mRNA Splicing - Major Pathway.
R-MMU-72203. Processing of Capped Intron-Containing Pre-mRNA.

Names & Taxonomyi

Protein namesi
Submitted name:
MCG13402, isoform CRA_aImported
Submitted name:
Polypyrimidine tract-binding protein 1Imported
Gene namesi
Name:Ptbp1Imported
ORF Names:mCG_13402Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 10

Organism-specific databases

MGIiMGI:97791. Ptbp1.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Expressioni

Gene expression databases

BgeeiENSMUSG00000006498.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini58 – 142RRMInterPro annotationAdd BLAST85
Domaini183 – 259RRMInterPro annotationAdd BLAST77
Domaini335 – 409RRMInterPro annotationAdd BLAST75
Domaini452 – 527RRMInterPro annotationAdd BLAST76

Phylogenomic databases

eggNOGiKOG1190. Eukaryota.
ENOG410XPMZ. LUCA.
GeneTreeiENSGT00550000074508.
HOVERGENiHBG069548.

Family and domain databases

CDDicd12777. RRM1_PTBP1. 1 hit.
cd12693. RRM2_PTBP1_like. 1 hit.
InterProiView protein in InterPro
IPR006536. HnRNP-L/PTB.
IPR034798. PTBP1/2/3_RRM2.
IPR035000. PTBP1_RRM1.
IPR035979. RBD_domain_sf.
IPR000504. RRM_dom.
PfamiView protein in Pfam
PF00076. RRM_1. 2 hits.
SMARTiView protein in SMART
SM00360. RRM. 4 hits.
SUPFAMiSSF54928. SSF54928. 4 hits.
TIGRFAMsiTIGR01649. hnRNP-L_PTB. 2 hits.
PROSITEiView protein in PROSITE
PS50102. RRM. 4 hits.

Sequencei

Sequence statusi: Complete.

Q8BGJ5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDGIVPDIAV GTKRGSDELF STCVSNGPFI MSSSASAANG NDSKKFKGDN
60 70 80 90 100
RSAGVPSRVI HVRKLPSDVT EGEVISLGLP FGKVTNLLML KGKNQAFIEM
110 120 130 140 150
NTEEAANTMV NYYTSVAPVL RGQPIYIQFS NHKELKTDSS PNQARAQAAL
160 170 180 190 200
QAVNSVQSGN LALAASAAAV DAGMAMAGQS PVLRIIVENL FYPVTLDVLH
210 220 230 240 250
QIFSKFGTVL KIITFTKNNQ FQALLQYADP VSAQHAKLSL DGQNIYNACC
260 270 280 290 300
TLRIDFSKLT SLNVKYNNDK SRDYTRPDLP SGDSQPSLDQ TMAAAFGLSV
310 320 330 340 350
PNVHGALAPL AIPSAAAAAA ASRIAIPGLA GAGNSVLLVS NLNPERVTPQ
360 370 380 390 400
SLFILFGVYG DVQRVKILFN KKENALVQMA DGSQAQLAMS HLNGHKLHGK
410 420 430 440 450
SVRITLSKHQ SVQLPREGQE DQGLTKDYGS SPLHRFKKPG SKNFQNIFPP
460 470 480 490 500
SATLHLSNIP PSVSEDDLKS LFSSNGGVVK GFKFFQKDRK MALIQMGSVE
510 520
EAVQALIELH NHDLGENHHL RVSFSKSTI
Length:529
Mass (Da):56,892
Last modified:March 1, 2003 - v1
Checksum:i92244CDC02A415F7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC151846 Genomic DNA. No translation available.
AK044956 mRNA. Translation: BAC32158.1.
AK051669 mRNA. Translation: BAC34712.1.
AK082600 mRNA. Translation: BAC38544.1.
AK149941 mRNA. Translation: BAE29183.1.
AK168359 mRNA. Translation: BAE40295.1.
CH466553 Genomic DNA. Translation: EDL31643.1.
CH466553 Genomic DNA. Translation: EDL31645.1.
RefSeqiNP_032982.2. NM_008956.3.
UniGeneiMm.265610.

Genome annotation databases

EnsembliENSMUST00000165704; ENSMUSP00000127783; ENSMUSG00000006498.
GeneIDi19205.
UCSCiuc007gac.2. mouse.

Similar proteinsi

Entry informationi

Entry nameiQ8BGJ5_MOUSE
AccessioniPrimary (citable) accession number: Q8BGJ5
Entry historyiIntegrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: October 25, 2017
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported