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Q8BGI1

- RNF24_MOUSE

UniProt

Q8BGI1 - RNF24_MOUSE

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Protein

RING finger protein 24

Gene

Rnf24

Organism
Mus musculus (Mouse)
Status
Reviewed - Annotation score: 2 out of 5- Experimental evidence at transcript leveli

Functioni

May play a role in TRPCs intracellular trafficking.By similarity

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri78 – 11942RING-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

  1. zinc ion binding Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
RING finger protein 24
Gene namesi
Name:Rnf24
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 2

Organism-specific databases

MGIiMGI:1261771. Rnf24.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei24 – 4421HelicalSequence AnalysisAdd
BLAST

GO - Cellular componenti

  1. Golgi apparatus Source: UniProtKB-KW
  2. integral component of membrane Source: UniProtKB-KW
Complete GO annotation...

Keywords - Cellular componenti

Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 148148RING finger protein 24PRO_0000056064Add
BLAST

Proteomic databases

PRIDEiQ8BGI1.

PTM databases

PhosphoSiteiQ8BGI1.

Expressioni

Gene expression databases

BgeeiQ8BGI1.
CleanExiMM_RNF24.
ExpressionAtlasiQ8BGI1. baseline and differential.
GenevestigatoriQ8BGI1.

Interactioni

Subunit structurei

Interacts with TRPC1, TRPC3, TRPC4, TRPC5, TRPC6 and TRPC7.By similarity

Structurei

3D structure databases

ProteinModelPortaliQ8BGI1.
SMRiQ8BGI1. Positions 68-128.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 RING-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri78 – 11942RING-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helix, Zinc-finger

Phylogenomic databases

eggNOGiNOG299260.
GeneTreeiENSGT00710000106755.
HOGENOMiHOG000004806.
HOVERGENiHBG058899.
InParanoidiQ8BGI1.
OMAiPHYSFRM.
OrthoDBiEOG7XDBHK.
PhylomeDBiQ8BGI1.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view]
PfamiPF13639. zf-RING_2. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8BGI1-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSSDFPHYNF RMPNIGFQNL PLNIYIVVFG TAVFVFILSL LFCCYLIRLR
60 70 80 90 100
HQAHKEFYAY KQVILKEKVK ELNLHELCAV CLEDFKPRDE LGICPCKHAF
110 120 130 140
HRKCLVKWLE VRKVCPLCNM PVLQLAQLHS KQDRGPPQEP LPGAENIV
Length:148
Mass (Da):17,254
Last modified:March 1, 2003 - v1
Checksum:i96DFD3E31B6CC5C8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK048813 mRNA. Translation: BAC33467.1.
AK083665 mRNA. Translation: BAC38987.1.
AK089207 mRNA. Translation: BAC40793.1.
CCDSiCCDS16762.1.
RefSeqiNP_848722.1. NM_178607.4.
XP_006499956.1. XM_006499893.1.
UniGeneiMm.477523.

Genome annotation databases

EnsembliENSMUST00000059372; ENSMUSP00000058630; ENSMUSG00000048911.
ENSMUST00000110194; ENSMUSP00000105823; ENSMUSG00000048911.
ENSMUST00000165420; ENSMUSP00000129843; ENSMUSG00000048911.
GeneIDi51902.
KEGGimmu:51902.
UCSCiuc008mlk.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK048813 mRNA. Translation: BAC33467.1 .
AK083665 mRNA. Translation: BAC38987.1 .
AK089207 mRNA. Translation: BAC40793.1 .
CCDSi CCDS16762.1.
RefSeqi NP_848722.1. NM_178607.4.
XP_006499956.1. XM_006499893.1.
UniGenei Mm.477523.

3D structure databases

ProteinModelPortali Q8BGI1.
SMRi Q8BGI1. Positions 68-128.
ModBasei Search...
MobiDBi Search...

PTM databases

PhosphoSitei Q8BGI1.

Proteomic databases

PRIDEi Q8BGI1.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSMUST00000059372 ; ENSMUSP00000058630 ; ENSMUSG00000048911 .
ENSMUST00000110194 ; ENSMUSP00000105823 ; ENSMUSG00000048911 .
ENSMUST00000165420 ; ENSMUSP00000129843 ; ENSMUSG00000048911 .
GeneIDi 51902.
KEGGi mmu:51902.
UCSCi uc008mlk.1. mouse.

Organism-specific databases

CTDi 11237.
MGIi MGI:1261771. Rnf24.

Phylogenomic databases

eggNOGi NOG299260.
GeneTreei ENSGT00710000106755.
HOGENOMi HOG000004806.
HOVERGENi HBG058899.
InParanoidi Q8BGI1.
OMAi PHYSFRM.
OrthoDBi EOG7XDBHK.
PhylomeDBi Q8BGI1.

Miscellaneous databases

NextBioi 308218.
PROi Q8BGI1.
SOURCEi Search...

Gene expression databases

Bgeei Q8BGI1.
CleanExi MM_RNF24.
ExpressionAtlasi Q8BGI1. baseline and differential.
Genevestigatori Q8BGI1.

Family and domain databases

Gene3Di 3.30.40.10. 1 hit.
InterProi IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
[Graphical view ]
Pfami PF13639. zf-RING_2. 1 hit.
[Graphical view ]
SMARTi SM00184. RING. 1 hit.
[Graphical view ]
PROSITEi PS50089. ZF_RING_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The transcriptional landscape of the mammalian genome."
    Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J.
    , Wilming L.G., Aidinis V., Allen J.E., Ambesi-Impiombato A., Apweiler R., Aturaliya R.N., Bailey T.L., Bansal M., Baxter L., Beisel K.W., Bersano T., Bono H., Chalk A.M., Chiu K.P., Choudhary V., Christoffels A., Clutterbuck D.R., Crowe M.L., Dalla E., Dalrymple B.P., de Bono B., Della Gatta G., di Bernardo D., Down T., Engstrom P., Fagiolini M., Faulkner G., Fletcher C.F., Fukushima T., Furuno M., Futaki S., Gariboldi M., Georgii-Hemming P., Gingeras T.R., Gojobori T., Green R.E., Gustincich S., Harbers M., Hayashi Y., Hensch T.K., Hirokawa N., Hill D., Huminiecki L., Iacono M., Ikeo K., Iwama A., Ishikawa T., Jakt M., Kanapin A., Katoh M., Kawasawa Y., Kelso J., Kitamura H., Kitano H., Kollias G., Krishnan S.P., Kruger A., Kummerfeld S.K., Kurochkin I.V., Lareau L.F., Lazarevic D., Lipovich L., Liu J., Liuni S., McWilliam S., Madan Babu M., Madera M., Marchionni L., Matsuda H., Matsuzawa S., Miki H., Mignone F., Miyake S., Morris K., Mottagui-Tabar S., Mulder N., Nakano N., Nakauchi H., Ng P., Nilsson R., Nishiguchi S., Nishikawa S., Nori F., Ohara O., Okazaki Y., Orlando V., Pang K.C., Pavan W.J., Pavesi G., Pesole G., Petrovsky N., Piazza S., Reed J., Reid J.F., Ring B.Z., Ringwald M., Rost B., Ruan Y., Salzberg S.L., Sandelin A., Schneider C., Schoenbach C., Sekiguchi K., Semple C.A., Seno S., Sessa L., Sheng Y., Shibata Y., Shimada H., Shimada K., Silva D., Sinclair B., Sperling S., Stupka E., Sugiura K., Sultana R., Takenaka Y., Taki K., Tammoja K., Tan S.L., Tang S., Taylor M.S., Tegner J., Teichmann S.A., Ueda H.R., van Nimwegen E., Verardo R., Wei C.L., Yagi K., Yamanishi H., Zabarovsky E., Zhu S., Zimmer A., Hide W., Bult C., Grimmond S.M., Teasdale R.D., Liu E.T., Brusic V., Quackenbush J., Wahlestedt C., Mattick J.S., Hume D.A., Kai C., Sasaki D., Tomaru Y., Fukuda S., Kanamori-Katayama M., Suzuki M., Aoki J., Arakawa T., Iida J., Imamura K., Itoh M., Kato T., Kawaji H., Kawagashira N., Kawashima T., Kojima M., Kondo S., Konno H., Nakano K., Ninomiya N., Nishio T., Okada M., Plessy C., Shibata K., Shiraki T., Suzuki S., Tagami M., Waki K., Watahiki A., Okamura-Oho Y., Suzuki H., Kawai J., Hayashizaki Y.
    Science 309:1559-1563(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C57BL/6J and NOD.
    Tissue: Cerebellum and Embryo.

Entry informationi

Entry nameiRNF24_MOUSE
AccessioniPrimary (citable) accession number: Q8BGI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 26, 2005
Last sequence update: March 1, 2003
Last modified: October 29, 2014
This is version 87 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3