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Protein

Calcium-activated chloride channel regulator 2

Gene

Clca2

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at transcript leveli

Functioni

Plays a role in modulating chloride current across the plasma membrane in a calcium-dependent manner, and cell adhesion. Involved in basal cell adhesion and/or stratification of squamous epithelia. May act as a tumor suppressor in breast and colorectal cancer. Plays a key role for cell adhesion in the beginning stages of lung metastasis via the binding to ITGB4.2 Publications

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Metal bindingi164ZincBy similarity1
Metal bindingi168ZincBy similarity1
Metal bindingi175ZincBy similarity1

GO - Molecular functioni

GO - Biological processi

  • cell adhesion Source: UniProtKB-KW
  • chloride transport Source: MGI
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Metalloprotease, Protease

Keywords - Biological processi

Cell adhesion, Ion transport, Transport

Keywords - Ligandi

Calcium, Chloride, Metal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-MMU-2672351. Stimuli-sensing channels.

Protein family/group databases

MEROPSiM87.003.

Names & Taxonomyi

Protein namesi
Recommended name:
Calcium-activated chloride channel regulator 2 (EC:3.4.-.-By similarity)
Alternative name(s):
Calcium-activated chloride channel family member 5
Short name:
mCLCA5
Gene namesi
Name:Clca2
Synonyms:Clca5
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
Proteomesi
  • UP000000589 Componenti: Chromosome 3

Organism-specific databases

MGIiMGI:2139758. Clca2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini33 – 905ExtracellularSequence analysisAdd BLAST873
Transmembranei906 – 926HelicalSequence analysisAdd BLAST21
Topological domaini927 – 942CytoplasmicSequence analysisAdd BLAST16

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell junction, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 32Sequence analysisAdd BLAST32
ChainiPRO_000033369633 – 942Calcium-activated chloride channel regulator 2Add BLAST910

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi74N-linked (GlcNAc...)Sequence analysis1
Glycosylationi97N-linked (GlcNAc...)Sequence analysis1
Glycosylationi231N-linked (GlcNAc...)Sequence analysis1
Glycosylationi235N-linked (GlcNAc...)Sequence analysis1
Glycosylationi254N-linked (GlcNAc...)Sequence analysis1
Glycosylationi286N-linked (GlcNAc...)Sequence analysis1
Glycosylationi522N-linked (GlcNAc...)Sequence analysis1
Glycosylationi580N-linked (GlcNAc...)Sequence analysis1
Glycosylationi637N-linked (GlcNAc...)Sequence analysis1
Glycosylationi821N-linked (GlcNAc...)Sequence analysis1

Post-translational modificationi

The translation product is autoproteolytically cleaved by the metalloprotease domain in the endoplasmic reticulum into a N-terminal and a C-terminal products that remain physically associated with each other. The cleavage is necessary for calcium-activated chloride channel (CaCC) activation activity.By similarity
N-glycosylated.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei708 – 709Cleavage; by autolysisBy similarity2

Keywords - PTMi

Autocatalytic cleavage, Glycoprotein

Proteomic databases

PaxDbiQ8BG22.
PRIDEiQ8BG22.

PTM databases

PhosphoSitePlusiQ8BG22.

Expressioni

Tissue specificityi

Highly expressed in eye, spleen, lung, kidney, uterus, and endothelial cells. Weakly expressed in heart and throughout the gastrointestinal tract. Highly expressed in mammary cell lines. Its expression in immortalized cell line HC11 correlates with slow or arrested growth. Re-expression in mammary tumor cells reduces colony survival.2 Publications

Inductioni

By 30-fold when cells are deprived of growth factors or anchorage in mammary epithelial cell. Down-regulated in metastatic mammary tumor cell lines.1 Publication

Gene expression databases

BgeeiENSMUSG00000036960.
GenevisibleiQ8BG22. MM.

Interactioni

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000036029.

Structurei

3D structure databases

ProteinModelPortaliQ8BG22.
SMRiQ8BG22.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini311 – 483VWFAPROSITE-ProRule annotationAdd BLAST173

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni54 – 205Metalloprotease domainBy similarityAdd BLAST152

Domaini

The metalloprotease region is responsible for autoproteolytic processing. It can also cross-cleave other CLCA Substrates.By similarity

Sequence similaritiesi

Belongs to the CLCR family.Curated
Contains 1 VWFA domain.PROSITE-ProRule annotation

Keywords - Domaini

Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG410IEPS. Eukaryota.
ENOG410XPSZ. LUCA.
GeneTreeiENSGT00390000004810.
HOGENOMiHOG000015107.
HOVERGENiHBG005560.
InParanoidiQ8BG22.
KOiK05028.
OMAiTNGPEHQ.
OrthoDBiEOG091G09E6.
PhylomeDBiQ8BG22.
TreeFamiTF328396.

Family and domain databases

Gene3Di3.40.50.410. 1 hit.
InterProiIPR013642. CLCA.
IPR004727. CLCA_chordata.
IPR002035. VWF_A.
[Graphical view]
PfamiPF08434. CLCA. 1 hit.
PF13519. VWA_2. 1 hit.
[Graphical view]
SMARTiSM00327. VWA. 1 hit.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 1 hit.
TIGRFAMsiTIGR00868. hCaCC. 1 hit.
PROSITEiPS50234. VWFA. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q8BG22-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTHRDSTGPV IGLKLVTLLF TLSPELLFLG AGLKLKENGY DGLLVAINPR
60 70 80 90 100
VPEDLKLITN IKEMITEASF YLFNATKRRV FFRNVQILVP ATWTDHNYSR
110 120 130 140 150
VRQESYDKAN VIVAEQSEEH GDDPYTLQHR GCGQEGRYIH FTPSFLLNDE
160 170 180 190 200
LAAGYGARGR VFVHEWAHLR WGVFDEYNND KPFYVNGRNE IQVTRCSSDI
210 220 230 240 250
TGVFVCEKGL CPHEDCIISK IFREGCTFLY NSTQNATGSI MFMPSLPSVV
260 270 280 290 300
EFCNESTHNQ EAPNLQNQVC SLRSTWDVIT ASSDLNHSLP VHGVGLPAPP
310 320 330 340 350
TFSLLQAGDR VVCLVIDVSR KMAEGDRLLR LQQAAELYLM QVVEAHTFVG
360 370 380 390 400
IVTFDSKGEI RASLQQIYSD DDRKLLVSYL PTAVSTDAET NICAGVKKGF
410 420 430 440 450
EVVEERNGRA DGSVLILVTS GADEHIANCL LTSMNSGSTI HSMALGSSAA
460 470 480 490 500
RKVGELSRLT GGLKFFIPDK FTSNGMTEAF VRISSGTGDI FQQSLQVESV
510 520 530 540 550
CETVQPQHQL ADTMTVDSAV GNDTLFLVTW QTGGPPEIAL LDPSGRKYNT
560 570 580 590 600
GDFIINLAFR TASLKIPGTA KHGHWTYTLN NTHHSPQALK VTVASRASSL
610 620 630 640 650
AMSPATLEAF VERDSTYFPQ PVIIYANVRK GLHPILNATV VATVEPEAGD
660 670 680 690 700
PVVLQLLDGG AGADVIRNDG IYSRYFSSFA VSGSYSLTVH VRHSPSTSTL
710 720 730 740 750
ALPVPGNHAM YVPGYITNDN IQMNAPKNLG HRPVKERWGF SRVSSGGSFS
760 770 780 790 800
VLGVPDGPHP DMFPPCKITD LEAMKVEDDV VLSWTAPGED FDQGQTTSYE
810 820 830 840 850
IRMSRSLWNI RDDFDNAILV NSSELVPQHA GTRETFTFSP KLVTHELDHE
860 870 880 890 900
LAEDAQEPYI VYVALRAMDR SSLRSAVSNI ALVSMSLPPN SSPVVSRDDL
910 920 930 940
ILKGVLTTVG LIAILCLIMV VAHCIFNRKK RPSRKENETK FL
Length:942
Mass (Da):103,626
Last modified:March 1, 2003 - v1
Checksum:iD0511E33CF317E4F
GO
Isoform 2 (identifier: Q8BG22-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     675-942: Missing.

Note: No experimental confirmation available.
Show »
Length:674
Mass (Da):73,983
Checksum:i190E0E58E4C6D0F1
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_033515675 – 942Missing in isoform 2. 1 PublicationAdd BLAST268

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY161007 mRNA. Translation: AAO18366.1.
AK028704 mRNA. Translation: BAC26076.1.
AK035512 mRNA. Translation: BAC29086.1.
AK048276 mRNA. Translation: BAC33291.1.
BC096379 mRNA. Translation: AAH96379.1.
CCDSiCCDS17890.1. [Q8BG22-1]
RefSeqiNP_848812.1. NM_178697.5. [Q8BG22-1]
XP_006501498.1. XM_006501435.1. [Q8BG22-2]
UniGeneiMm.331420.

Genome annotation databases

EnsembliENSMUST00000040465; ENSMUSP00000036029; ENSMUSG00000036960. [Q8BG22-1]
ENSMUST00000198993; ENSMUSP00000143161; ENSMUSG00000036960. [Q8BG22-2]
GeneIDi229933.
KEGGimmu:229933.
UCSCiuc008rqg.1. mouse. [Q8BG22-1]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY161007 mRNA. Translation: AAO18366.1.
AK028704 mRNA. Translation: BAC26076.1.
AK035512 mRNA. Translation: BAC29086.1.
AK048276 mRNA. Translation: BAC33291.1.
BC096379 mRNA. Translation: AAH96379.1.
CCDSiCCDS17890.1. [Q8BG22-1]
RefSeqiNP_848812.1. NM_178697.5. [Q8BG22-1]
XP_006501498.1. XM_006501435.1. [Q8BG22-2]
UniGeneiMm.331420.

3D structure databases

ProteinModelPortaliQ8BG22.
SMRiQ8BG22.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10090.ENSMUSP00000036029.

Protein family/group databases

MEROPSiM87.003.

PTM databases

PhosphoSitePlusiQ8BG22.

Proteomic databases

PaxDbiQ8BG22.
PRIDEiQ8BG22.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000040465; ENSMUSP00000036029; ENSMUSG00000036960. [Q8BG22-1]
ENSMUST00000198993; ENSMUSP00000143161; ENSMUSG00000036960. [Q8BG22-2]
GeneIDi229933.
KEGGimmu:229933.
UCSCiuc008rqg.1. mouse. [Q8BG22-1]

Organism-specific databases

CTDi9635.
MGIiMGI:2139758. Clca2.

Phylogenomic databases

eggNOGiENOG410IEPS. Eukaryota.
ENOG410XPSZ. LUCA.
GeneTreeiENSGT00390000004810.
HOGENOMiHOG000015107.
HOVERGENiHBG005560.
InParanoidiQ8BG22.
KOiK05028.
OMAiTNGPEHQ.
OrthoDBiEOG091G09E6.
PhylomeDBiQ8BG22.
TreeFamiTF328396.

Enzyme and pathway databases

ReactomeiR-MMU-2672351. Stimuli-sensing channels.

Miscellaneous databases

PROiQ8BG22.
SOURCEiSearch...

Gene expression databases

BgeeiENSMUSG00000036960.
GenevisibleiQ8BG22. MM.

Family and domain databases

Gene3Di3.40.50.410. 1 hit.
InterProiIPR013642. CLCA.
IPR004727. CLCA_chordata.
IPR002035. VWF_A.
[Graphical view]
PfamiPF08434. CLCA. 1 hit.
PF13519. VWA_2. 1 hit.
[Graphical view]
SMARTiSM00327. VWA. 1 hit.
[Graphical view]
SUPFAMiSSF53300. SSF53300. 1 hit.
TIGRFAMsiTIGR00868. hCaCC. 1 hit.
PROSITEiPS50234. VWFA. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiCLCA2_MOUSE
AccessioniPrimary (citable) accession number: Q8BG22
Secondary accession number(s): Q8BZF7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: March 1, 2003
Last modified: November 30, 2016
This is version 110 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.