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Protein
Submitted name:

Methyl-CpG binding protein MBD2

Gene

mbd2

Organism
Xenopus laevis (African clawed frog)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Methyl-CpG binding protein MBD2Imported
Gene namesi
Name:mbd2Imported
Synonyms:MBD2Imported
OrganismiXenopus laevis (African clawed frog)Imported
Taxonomic identifieri8355 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiAmphibiaBatrachiaAnuraPipoideaPipidaeXenopodinaeXenopusXenopus

Organism-specific databases

XenbaseiXB-GENE-493780. mbd2.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Structurei

3D structure databases

ProteinModelPortaliQ8AYT1.
SMRiQ8AYT1. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1 – 6969MBD (methyl-CpG-binding)InterPro annotationAdd
BLAST

Phylogenomic databases

HOVERGENiHBG052417.
KOiK11590.

Family and domain databases

Gene3Di3.30.890.10. 2 hits.
InterProiIPR016177. DNA-bd_dom.
IPR032343. MBD2/MBD3_p55-bd.
IPR025884. MeCpG-bd_2/3_C_dom.
IPR001739. Methyl_CpG_DNA-bd.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF14048. MBD_C. 1 hit.
PF16564. MBDa. 1 hit.
[Graphical view]
SMARTiSM00391. MBD. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q8AYT1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEKRRLECPA LPAGWKKEEV IRKSGLSAGK SDVYYYSPNG KKFRSKPQLA
60 70 80 90 100
RYLGNSVDLN SFDFRTGKMM PSKLQKNKQR LRNDPLNQNK SKPDLNTTLP
110 120 130 140 150
IRQTASIFKQ PVTKITNHPS NKVKSDPQRV IEQPRQLFWE KRLEGLSASD
160 170 180 190 200
VTEQVLKPME LPKGLQGVGP RNNEETLLAA IASALHTSSA PITGQLSATV
210 220 230 240 250
EKNPSVWLNT FQPLCKAFLV TDEDIRKQED KVQNVRRRLE EALMADILAR
260
DSEASQNSDI YMDSRDD
Length:267
Mass (Da):30,250
Last modified:March 1, 2003 - v1
Checksum:i4EAA5955671BE30D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB061672 mRNA. Translation: BAC23079.1.
RefSeqiNP_001083787.1. NM_001090318.1.
UniGeneiXl.66388.

Genome annotation databases

GeneIDi399118.
KEGGixla:399118.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB061672 mRNA. Translation: BAC23079.1.
RefSeqiNP_001083787.1. NM_001090318.1.
UniGeneiXl.66388.

3D structure databases

ProteinModelPortaliQ8AYT1.
SMRiQ8AYT1. Positions 1-71.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi399118.
KEGGixla:399118.

Organism-specific databases

CTDi8932.
XenbaseiXB-GENE-493780. mbd2.

Phylogenomic databases

HOVERGENiHBG052417.
KOiK11590.

Family and domain databases

Gene3Di3.30.890.10. 2 hits.
InterProiIPR016177. DNA-bd_dom.
IPR032343. MBD2/MBD3_p55-bd.
IPR025884. MeCpG-bd_2/3_C_dom.
IPR001739. Methyl_CpG_DNA-bd.
[Graphical view]
PfamiPF01429. MBD. 1 hit.
PF14048. MBD_C. 1 hit.
PF16564. MBDa. 1 hit.
[Graphical view]
SMARTiSM00391. MBD. 1 hit.
[Graphical view]
SUPFAMiSSF54171. SSF54171. 1 hit.
PROSITEiPS50982. MBD. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Xenopus MBD3 plays a crucial role in an early stage of development."
    Iwano H., Nakamura M., Tajima S.
    Dev. Biol. 268:416-428(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.

Entry informationi

Entry nameiQ8AYT1_XENLA
AccessioniPrimary (citable) accession number: Q8AYT1
Entry historyi
Integrated into UniProtKB/TrEMBL: March 1, 2003
Last sequence update: March 1, 2003
Last modified: March 16, 2016
This is version 50 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.