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Protein

Ribonuclease Y

Gene

rny

Organism
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Endoribonuclease that initiates mRNA decay.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Endonuclease, Hydrolase, Nuclease

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

BioCyciBTHE226186:GJXV-4497-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease YUniRule annotation (EC:3.1.-.-UniRule annotation)
Short name:
RNase YUniRule annotation
Gene namesi
Name:rnyUniRule annotation
Ordered Locus Names:BT_4417
OrganismiBacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Taxonomic identifieri226186 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
Proteomesi
  • UP000001414 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei2 – 2221HelicalUniRule annotationAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 511511Ribonuclease YPRO_0000163766Add
BLAST

Proteomic databases

PaxDbiQ89ZG0.

Interactioni

Protein-protein interaction databases

STRINGi226186.BT_4417.

Structurei

3D structure databases

ProteinModelPortaliQ89ZG0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini201 – 26161KHUniRule annotationAdd
BLAST
Domaini328 – 41891HDUniRule annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RNase Y family.UniRule annotation
Contains 1 HD domain.UniRule annotation
Contains 1 KH domain.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105E4Y. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000221256.
InParanoidiQ89ZG0.
KOiK18682.
OMAiYYARGQA.
OrthoDBiEOG6QCD98.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.1370.10. 1 hit.
HAMAPiMF_00335. RNase_Y.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR006675. HDIG_dom.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR017705. Ribonuclease_Y.
IPR022711. RNase_Y_N.
[Graphical view]
PfamiPF12072. DUF3552. 1 hit.
PF01966. HD. 1 hit.
PF00013. KH_1. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
SM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.
TIGR03319. RNase_Y. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q89ZG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIAIIATAIA CFVVGGILSY VLFRYVLKSK YDSVLKDAET EAEVIKKNKL
60 70 80 90 100
LEVKEKFLNK KADLEKEVAL RNQKIQQAEN KLKQREMVLS QRQEEIQRKK
110 120 130 140 150
LEAEAVKENL EAQLVIVDKK KEELDKLQHQ EIEKLEAISG LSADEAKERL
160 170 180 190 200
VESLKEEAKT QAQSFINDIM DDAKLTASKE AKRIVIQSIQ RVATETAIEN
210 220 230 240 250
SVTVFHIESD EIKGRIIGRE GRNIRALEAA TGVEIVVDDT PEAIVLSAFD
260 270 280 290 300
PVRREIARLA LHQLVTDGRI HPARIEEVVS KVRKQVEEEI IETGKRTTID
310 320 330 340 350
LGIHGLHPEL IRIIGKMKYR SSYGQNLLQH ARETANLCAV MASELGLNPK
360 370 380 390 400
KAKRAGLLHD IGKVPDEEPE LPHALLGMKL AEKYKEKPDI CNAIGAHHDE
410 420 430 440 450
TEMTSLLAPI VQVCDAISGA RPGARREIVE AYIKRLNDLE QLAMAYPGVT
460 470 480 490 500
KTYAIQAGRE LRVIVGADKI DDKQTESLSG EIAKKIQDEM TYPGQVKITV
510
IRETRAVSFA K
Length:511
Mass (Da):57,199
Last modified:June 20, 2003 - v1
Checksum:iB38C16A7C02AA9F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015928 Genomic DNA. Translation: AAO79522.1.
RefSeqiNP_813328.1. NC_004663.1.
WP_008760083.1. NC_004663.1.

Genome annotation databases

EnsemblBacteriaiAAO79522; AAO79522; BT_4417.
GeneIDi1073004.
KEGGibth:BT_4417.
PATRICi21063902. VBIBacThe70966_4497.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015928 Genomic DNA. Translation: AAO79522.1.
RefSeqiNP_813328.1. NC_004663.1.
WP_008760083.1. NC_004663.1.

3D structure databases

ProteinModelPortaliQ89ZG0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi226186.BT_4417.

Proteomic databases

PaxDbiQ89ZG0.

Protocols and materials databases

DNASUi1073004.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAO79522; AAO79522; BT_4417.
GeneIDi1073004.
KEGGibth:BT_4417.
PATRICi21063902. VBIBacThe70966_4497.

Phylogenomic databases

eggNOGiENOG4105E4Y. Bacteria.
COG1418. LUCA.
HOGENOMiHOG000221256.
InParanoidiQ89ZG0.
KOiK18682.
OMAiYYARGQA.
OrthoDBiEOG6QCD98.

Enzyme and pathway databases

BioCyciBTHE226186:GJXV-4497-MONOMER.

Family and domain databases

Gene3Di1.10.3210.10. 1 hit.
3.30.1370.10. 1 hit.
HAMAPiMF_00335. RNase_Y.
InterProiIPR003607. HD/PDEase_dom.
IPR006674. HD_domain.
IPR006675. HDIG_dom.
IPR004087. KH_dom.
IPR004088. KH_dom_type_1.
IPR017705. Ribonuclease_Y.
IPR022711. RNase_Y_N.
[Graphical view]
PfamiPF12072. DUF3552. 1 hit.
PF01966. HD. 1 hit.
PF00013. KH_1. 1 hit.
[Graphical view]
SMARTiSM00471. HDc. 1 hit.
SM00322. KH. 1 hit.
[Graphical view]
SUPFAMiSSF54791. SSF54791. 1 hit.
TIGRFAMsiTIGR00277. HDIG. 1 hit.
TIGR03319. RNase_Y. 1 hit.
PROSITEiPS50084. KH_TYPE_1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "A genomic view of the human-Bacteroides thetaiotaomicron symbiosis."
    Xu J., Bjursell M.K., Himrod J., Deng S., Carmichael L.K., Chiang H.C., Hooper L.V., Gordon J.I.
    Science 299:2074-2076(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482.

Entry informationi

Entry nameiRNY_BACTN
AccessioniPrimary (citable) accession number: Q89ZG0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: June 20, 2003
Last modified: November 11, 2015
This is version 85 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.