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Protein

Ribonuclease Y

Gene

rny

Organism
Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Endoribonuclease that initiates mRNA decay.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionEndonuclease, Hydrolase, Nuclease, RNA-binding

Enzyme and pathway databases

BioCyciBTHE:G13PU-9399-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
Ribonuclease YUniRule annotation (EC:3.1.-.-UniRule annotation)
Short name:
RNase YUniRule annotation
Gene namesi
Name:rnyUniRule annotation
Ordered Locus Names:BT_4417
OrganismiBacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482)
Taxonomic identifieri226186 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesBacteroidiaBacteroidalesBacteroidaceaeBacteroides
Proteomesi
  • UP000001414 Componenti: Chromosome

Subcellular locationi

  • Cell membrane UniRule annotation; Single-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei2 – 22HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001637661 – 511Ribonuclease YAdd BLAST511

Proteomic databases

PaxDbiQ89ZG0
PRIDEiQ89ZG0

Interactioni

Protein-protein interaction databases

STRINGi226186.BT_4417

Structurei

3D structure databases

ProteinModelPortaliQ89ZG0
SMRiQ89ZG0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini201 – 261KHUniRule annotationAdd BLAST61
Domaini327 – 420HDPROSITE-ProRule annotationAdd BLAST94

Sequence similaritiesi

Belongs to the RNase Y family.UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105E4Y Bacteria
COG1418 LUCA
HOGENOMiHOG000221256
InParanoidiQ89ZG0
KOiK18682
OMAiPHAILGM
OrthoDBiPOG091H00E1

Family and domain databases

CDDicd00077 HDc, 1 hit
Gene3Di3.30.1370.10, 1 hit
HAMAPiMF_00335 RNase_Y, 1 hit
InterProiView protein in InterPro
IPR003607 HD/PDEase_dom
IPR006674 HD_domain
IPR006675 HDIG_dom
IPR004087 KH_dom
IPR004088 KH_dom_type_1
IPR036612 KH_dom_type_1_sf
IPR017705 Ribonuclease_Y
IPR022711 RNase_Y_N
PANTHERiPTHR12826:SF15 PTHR12826:SF15, 1 hit
PfamiView protein in Pfam
PF12072 DUF3552, 1 hit
PF01966 HD, 1 hit
PF00013 KH_1, 1 hit
SMARTiView protein in SMART
SM00471 HDc, 1 hit
SM00322 KH, 1 hit
SUPFAMiSSF54791 SSF54791, 1 hit
TIGRFAMsiTIGR00277 HDIG, 1 hit
TIGR03319 RNase_Y, 1 hit
PROSITEiView protein in PROSITE
PS51831 HD, 1 hit
PS50084 KH_TYPE_1, 1 hit

Sequencei

Sequence statusi: Complete.

Q89ZG0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MIAIIATAIA CFVVGGILSY VLFRYVLKSK YDSVLKDAET EAEVIKKNKL
60 70 80 90 100
LEVKEKFLNK KADLEKEVAL RNQKIQQAEN KLKQREMVLS QRQEEIQRKK
110 120 130 140 150
LEAEAVKENL EAQLVIVDKK KEELDKLQHQ EIEKLEAISG LSADEAKERL
160 170 180 190 200
VESLKEEAKT QAQSFINDIM DDAKLTASKE AKRIVIQSIQ RVATETAIEN
210 220 230 240 250
SVTVFHIESD EIKGRIIGRE GRNIRALEAA TGVEIVVDDT PEAIVLSAFD
260 270 280 290 300
PVRREIARLA LHQLVTDGRI HPARIEEVVS KVRKQVEEEI IETGKRTTID
310 320 330 340 350
LGIHGLHPEL IRIIGKMKYR SSYGQNLLQH ARETANLCAV MASELGLNPK
360 370 380 390 400
KAKRAGLLHD IGKVPDEEPE LPHALLGMKL AEKYKEKPDI CNAIGAHHDE
410 420 430 440 450
TEMTSLLAPI VQVCDAISGA RPGARREIVE AYIKRLNDLE QLAMAYPGVT
460 470 480 490 500
KTYAIQAGRE LRVIVGADKI DDKQTESLSG EIAKKIQDEM TYPGQVKITV
510
IRETRAVSFA K
Length:511
Mass (Da):57,199
Last modified:June 20, 2003 - v1
Checksum:iB38C16A7C02AA9F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015928 Genomic DNA Translation: AAO79522.1
RefSeqiNP_813328.1, NC_004663.1
WP_008760083.1, NC_004663.1

Genome annotation databases

EnsemblBacteriaiAAO79522; AAO79522; BT_4417
GeneIDi1073004
31618117
KEGGibth:BT_4417
PATRICifig|226186.12.peg.4497

Similar proteinsi

Entry informationi

Entry nameiRNY_BACTN
AccessioniPrimary (citable) accession number: Q89ZG0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 20, 2003
Last sequence update: June 20, 2003
Last modified: May 23, 2018
This is version 97 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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