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Q89WK4 (RNPH_BRAJA) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 45. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH

Short name=RNase PH
EC=2.7.7.56
Alternative name(s):
tRNA nucleotidyltransferase
Gene names
Name:rph
Ordered Locus Names:bll0674
OrganismBradyrhizobium japonicum
Taxonomic identifier375 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Protein attributes

Sequence length237 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP MF_00564

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP MF_00564

Sequence similarities

Belongs to the RNase PH family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 237237Ribonuclease PH HAMAP MF_00564
PRO_0000139875

Sequences

Sequence LengthMass (Da)Tools
Q89WK4 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: ABD1899D4DC79323

FASTA23725,912
        10         20         30         40         50         60 
MRPSRRAPDE LRPVTLERGV VKYAEGSCLV KFGDTHVLVT ATLEDRLPPW LKGQGRGWVT 

        70         80         90        100        110        120 
AEYGMLPRAT SERTRREASA GKQSGRTVEI QRLIGRSLRT IINLEALGER QITVDCDVLQ 

       130        140        150        160        170        180 
ADGGTRTASI TGAWVALADC VNWMKARNMV KANVLRDNVA AISCGIYNGT PVLDLDYAED 

       190        200        210        220        230 
SEAQTDANFV MTGDGRIIEV QGTAEREPFT QDELLALMAL AQKGIARLVD LQKLAVA 

« Hide

References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed: 12597275] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC45939.1.
RefSeqNP_767314.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89WK4.
SMRQ89WK4. Positions 2-235.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1049284.
GenomeReviewsGene locus bll0674 in contig BA000040_GR.
KEGGbja:bll0674.
NMPDRfig|224911.1.peg.674.
PATRIC21184842. VBIBraJap65052_0695.

Phylogenomic databases

HOGENOMHBG737187.
OMAMLPRATG.
PhylomeDBQ89WK4.
ProtClustDBPRK00173.

Enzyme and pathway databases

BioCycBJAP224911:BLL0674-MONOMER.

Family and domain databases

HAMAPMF_00564. RNase_PH.
[Tree]
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
KOK00989.
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRNPH_BRAJA
AccessionPrimary (citable) accession number: Q89WK4
Entry history
Integrated into UniProtKB/Swiss-Prot: March 15, 2005
Last sequence update: June 1, 2003
Last modified: January 25, 2012
This is version 45 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families