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Protein

tRNA pseudouridine synthase B

Gene

truB

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.UniRule annotation

Catalytic activityi

tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Active sitei72NucleophileUniRule annotation1

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionIsomerase
Biological processtRNA processing

Enzyme and pathway databases

BioCyciBDIA224911:G1G3J-789-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
Alternative name(s):
tRNA pseudouridine(55) synthaseUniRule annotation
Short name:
Psi55 synthaseUniRule annotation
tRNA pseudouridylate synthaseUniRule annotation
tRNA-uridine isomeraseUniRule annotation
Gene namesi
Name:truBUniRule annotation
Ordered Locus Names:bll0781
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000002526 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001218031 – 345tRNA pseudouridine synthase BAdd BLAST345

Proteomic databases

PRIDEiQ89WB1

Interactioni

Protein-protein interaction databases

STRINGi224911.bll0781

Structurei

3D structure databases

ProteinModelPortaliQ89WB1
SMRiQ89WB1
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105D0T Bacteria
COG0130 LUCA
HOGENOMiHOG000231225
InParanoidiQ89WB1
KOiK03177
OMAiVDCSKGT
OrthoDBiPOG091H02G9
PhylomeDBiQ89WB1

Family and domain databases

HAMAPiMF_01080 TruB_bact, 1 hit
InterProiView protein in InterPro
IPR020103 PsdUridine_synth_cat_dom_sf
IPR002501 PsdUridine_synth_N
IPR014780 tRNA_psdUridine_synth_TruB
IPR015240 tRNA_sdUridine_synth_fam1_C
IPR032819 TruB_C
PANTHERiPTHR13767 PTHR13767, 1 hit
PfamiView protein in Pfam
PF09157 TruB-C_2, 1 hit
PF16198 TruB_C_2, 1 hit
PF01509 TruB_N, 1 hit
SUPFAMiSSF55120 SSF55120, 1 hit
TIGRFAMsiTIGR00431 TruB, 1 hit

Sequencei

Sequence statusi: Complete.

Q89WB1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGGNSQPHQE PRRVNNDPRA KQQKGNQVRR DRRDVHGWVV LDKPIGMTST
60 70 80 90 100
QAVAVLKRLF NAKRAGHAGT LDPLASGGLP IALGEATKTV PFVMDGRKRY
110 120 130 140 150
QFTVCWGEER DTDDIEGRVT ATSELRPTRE AILALLPRFT GVIEQIPPRY
160 170 180 190 200
SAIKIQGERA YDLARDGEVV ELAPRPVEIH RLTLVDQPDN DRAVFEAECG
210 220 230 240 250
KGTYVRALAR DMGRILGTYG HICALRRTLV GPFGENDMIP LDQLEALCDR
260 270 280 290 300
AASGEGSLAD ALLPVETALD DIPALAVTRA DAARLHRGQA VLLRGRDAPT
310 320 330 340
CSGTVYVTVA GRLLALAEVG NGEIIPKRVF NLTGLTASPG RNERN
Length:345
Mass (Da):37,572
Last modified:June 1, 2003 - v1
Checksum:iEFEF73795D4AD951
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA Translation: BAC46046.1
RefSeqiNP_767421.1, NC_004463.1
WP_011083603.1, NZ_CP011360.1

Genome annotation databases

EnsemblBacteriaiBAC46046; BAC46046; BAC46046
GeneIDi1050569
KEGGibja:bll0781
PATRICifig|224911.5.peg.805

Similar proteinsi

Entry informationi

Entry nameiTRUB_BRADU
AccessioniPrimary (citable) accession number: Q89WB1
Entry historyiIntegrated into UniProtKB/Swiss-Prot: September 26, 2003
Last sequence update: June 1, 2003
Last modified: May 23, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health