Skip Header

 
Contribute Send feedback
Read comments (0) or add your own

Reviewed, UniProtKB/Swiss-Prot Q89VC7 (XYLA_BRAJA)

Last modified September 22, 2009. Version 38. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Hide | Top

Names and origin

Protein namesRecommended name:
    Xylose isomerase
    EC=5.3.1.5
Gene names
Name: xylA
Ordered Locus Names: blr1120
OrganismBradyrhizobium japonicum [Complete proteome] [HAMAP]
Taxonomic identifier375 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Hide | Top

Protein attributes

Sequence length438 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

Hide | Top

General annotation (Comments)

Catalytic activity

D-xylose = D-xylulose. HAMAP MF_00455

Cofactor

Binds 2 magnesium ions per subunit By similarity.

Subunit structure

Homotetramer By similarity.

Subcellular location

Cytoplasm By similarity.

Sequence similarities

Belongs to the xylose isomerase family.

Hide | Top

Ontologies

Keywords
   Biological processCarbohydrate metabolism
Pentose shunt
Xylose metabolism
   Cellular componentCytoplasm
   LigandMagnesium
Metal-binding
   Molecular functionIsomerase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological processD-xylose metabolic process

Inferred from electronic annotation. Source: HAMAP

pentose-phosphate shunt

Inferred from electronic annotation. Source: HAMAP

   Cellular componentcytoplasm

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular functionmagnesium ion binding

Inferred from electronic annotation. Source: HAMAP

xylose isomerase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Hide | Top

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 438438Xylose isomerase HAMAP MF_00455
PRO_0000195770

Sites

Active site1021 By similarity
Active site1051 By similarity
Metal binding2331Magnesium 1 By similarity
Metal binding2691Magnesium 1 By similarity
Metal binding2691Magnesium 2 By similarity
Metal binding2721Magnesium 2 By similarity
Metal binding2971Magnesium 1 By similarity
Metal binding3081Magnesium 2 By similarity
Metal binding3101Magnesium 2 By similarity
Metal binding3401Magnesium 1 By similarity

Hide | Top

Sequences

Sequence LengthMass (Da)Tools
Q89VC7-1 [UniParc].

Last modified May 30, 2006. Version 2.
Checksum: EDF07C3B278BB997

FASTA43848,461
        10         20         30         40         50         60 
MSAKFFEEST PVAFAGQDAG PAPAFRWYDK DRLVHGRRLE DHLRFAVCYW HSLCWPGGDP 

        70         80         90        100        110        120 
FGGETFLRPW HHGTDAMAQA RAKADVAFEL FRLLDVPFFT FHDVDAAPEG ASLAESVANL 

       130        140        150        160        170        180 
NAIADLFEAK MASAKVRLLW GTANLFTHRR YMAGAATNPD PDIFTYAAGQ VRAALEVTHR 

       190        200        210        220        230        240 
LGGQNYVLWG GREGYETLLN TDLKRELDQL GRFVSLVVEH KHKIGFNGPI LIEPKPKEPT 

       250        260        270        280        290        300 
KHQYDFDVAT CYGFLARYDL LKDVKLNIEQ NHAILAGHSF HHEVALAEAL GVFGSLDVNR 

       310        320        330        340        350        360 
GDDLLGWDTD QFAMNVPELA LVFHEILNRG GFTSGGLNFD AKIRRQSIDP DDLIHAHVGS 

       370        380        390        400        410        420 
MDACARAFLA AADMLDAGAL TAPLDKRYEG WAGPEGRAIL GGQRSLADLA DRALGPGFDP 

       430 
QPRSGRQEYL ESLVNRYV

« Hide

Hide | Top

References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed: 12597275] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: USDA 110.

Hide | Top

Cross-references

Sequence databases

BA000040 Genomic DNA. Translation: BAC46385.1. Different initiation.
RefSeqNP_767760.1.

3D structure databases

HSSPHSSP built from PDB template 1A0E based on UniProtKB P45687.
ModBaseSearch...

Genome annotation databases

GeneID1054407.
GenomeReviewsGene locus blr1120 in contig BA000040_GR.
KEGGbja:blr1120.
NMPDRfig|224911.1.peg.1120.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ89VC7.

Enzyme and pathway databases

BioCycBJAP224911:BLR1120-MON.
BRENDA5.3.1.5. 280.

Family and domain databases

HAMAPMF_00455.
[Tree]
InterProIPR013022. Xyl_isomerase-like_TIM-brl.
IPR012307. Xyl_isomerase_TIM-brl.
IPR013452. Xylose_isom_bac.
IPR001998. Xylose_isomerase.
IPR018115. Xylose_isomerase_AS.
[Graphical view]
Gene3DG3DSA:3.20.20.150. Xyl_isomerase-like_TIM-brl. 1 hit.
PfamPF01261. AP_endonuc_2. 1 hit.
[Graphical view]
PRINTSPR00688. XYLOSISMRASE.
TIGRFAMsTIGR02630. xylose_isom_A. 1 hit.
PROSITEPS51415. XYLOSE_ISOMERASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Hide | Top

Entry information

Entry nameXYLA_BRAJA
AccessionPrimary (citable) accession number: Q89VC7
Entry history
Integrated into UniProtKB/Swiss-Prot: July 19, 2004
Last sequence update: May 30, 2006
Last modified: September 22, 2009
This is version 38 of the entry and version 2 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Hide | Top

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents