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Q89VA3 (Q89VA3_BRADU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 63. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length625 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q89VA3 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 56BED3A80A46AD42

FASTA62569,415
        10         20         30         40         50         60 
MNRFAELLDR LAYEPGRNNK LRLITGYFRE VGDPDRGYAL AALTGALSFK HAKPALIRDL 

        70         80         90        100        110        120 
IASRTDEVLF GLSYDYVGDL SETVALMWPK RSASSDESFP GHPSPPPSPT RGEGAQQYAA 

       130        140        150        160        170        180 
LSASTTTNSD SQSDGGTSLT VPSPLAGEGQ GGGYRGRDAS DALHPSNHNN PPPPTLTEVV 

       190        200        210        220        230        240 
TTLRTLGKTE LPKQLERWLD ELDETGRWAL LKLVTGALRI GISARLAKTA AAALGDKDPH 

       250        260        270        280        290        300 
EVELIWPGLA PPYLDLFAWL EGRGEKPVNR DPAPFRPVML AHAIDDTDFV ALDPADYIAE 

       310        320        330        340        350        360 
WKWDGIRVQA VAGRDDRGHV TARLYSRTGE DITGSFPDLV PSLRLPGAID GELLILREGR 

       370        380        390        400        410        420 
VQSFNVLQQR LNRKAVSPKL IKEFPIHLRA YDLLGDDEND LRELPFTERR ERLETFITKL 

       430        440        450        460        470        480 
GDPRIDLSPI VPFASWEALT AARADPASAG AGEDADAVEG VMLKRRDAPY LPGRPKGQWW 

       490        500        510        520        530        540 
KWKRDPHIID AVLMYAQRGH GKRSSYYSDY TFGVWTEGET GDELVPVGKA YFGFTDEELL 

       550        560        570        580        590        600 
QIDRFVRRNT TEKFGPVRHV VHEGDKGLVL EVAFEGLQRS PRHKSGVAMR FPRISRLRWD 

       610        620 
KPPREADRLE TLEKMLKAEA AEVEA 

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References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC46409.1.
RefSeqNP_767784.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89VA3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224911.bll1144.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC46409; BAC46409; BAC46409.
GeneID1049800.
KEGGbja:bll1144.
PATRIC21185828. VBIBraJap65052_1184.

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.
OMAKHAKPAL.
OrthoDBEOG6Q8HXT.
ProtClustDBPRK09247.

Enzyme and pathway databases

BioCycBJAP224911:GJEJ-1154-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ89VA3_BRADU
AccessionPrimary (citable) accession number: Q89VA3
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)