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Q89T28 (DADA_BRAJA) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 56. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
D-amino acid dehydrogenase small subunit
EC=1.4.99.1
Gene names
Name:dadA
Ordered Locus Names:blr2222
OrganismBradyrhizobium japonicum
Taxonomic identifier375 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium

Protein attributes

Sequence length421 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202

Catalytic activity

A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202

Cofactor

FAD By similarity. HAMAP MF_01202

Subunit structure

Heterodimer of a small and a large subunit By similarity.

Sequence similarities

Belongs to the DadA oxidoreductase family.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 421421D-amino acid dehydrogenase small subunit HAMAP MF_01202
PRO_0000166127

Regions

Nucleotide binding3 – 1715FAD Potential

Sequences

Sequence LengthMass (Da)Tools
Q89T28 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 4859B8F71BFCB76C

FASTA42145,326
        10         20         30         40         50         60 
MKVLILGSGV IGVTSAYYLA GAGHDVTVVD RQPEPALETS FANAGEVSPG YSSPWAGPGV 

        70         80         90        100        110        120 
PVKAVKWLLM KHGPLVIRPK LDPVMWVWLL KMLRNCTSAR YAVNKSRMIP IAEYSRDCLR 

       130        140        150        160        170        180 
DLRRDIGIQY DERSQGTLQL FRHQAQLDGT GEDIAVLKQY GVPFEVLGRE GCIAVEPALA 

       190        200        210        220        230        240 
GVKEKFAGGL RLPQDETGDC HMFTQALAKH AQALGVRFMF NTGIDRIVTD GARVSGVVTS 

       250        260        270        280        290        300 
AGVLQADAYV LALGSWSSRL VAPLGISLPV YPVKGYSITV PIKDASGAPE STVMDESYKV 

       310        320        330        340        350        360 
AITRLGNRIR VGGTAEISGF SSKLYDARRA TLDHSLTDLF PRGGDLSKAT FWSGLRPMTP 

       370        380        390        400        410        420 
DGPPVIGPTQ YANLHLNTGH GTLGWTMSCG SGRVLADMLS GKKPEVDVSA LTVDRYAHRF 


G

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References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed: 12597275] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		BA000040 Genomic DNA. Translation: BAC47487.1.
RefSeqNP_768862.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89T28.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID1055326.
GenomeReviewsGene locus blr2222 in contig BA000040_GR.
KEGGbja:blr2222.
NMPDRfig|224911.1.peg.2222.
PATRIC21187770. VBIBraJap65052_2146.

Phylogenomic databases

HOGENOMHBG729204.
OMAVDRQPAV.
PhylomeDBQ89T28.
ProtClustDBPRK00711.

Enzyme and pathway databases

BioCycBJAP224911:BLR2222-MONOMER.

Family and domain databases

HAMAPMF_01202. DadA.
[Tree]
InterProIPR023080. D-aa_DH_ssu_DadA.
IPR006076. FAD-dep_OxRdtase.
IPR006036. K_uptake_TrkA.
[Graphical view]
KOK00285.
PfamPF01266. DAO. 1 hit.
[Graphical view]
PRINTSPR00335. KUPTAKETRKA.
ProtoNetSearch...

Entry information

Entry nameDADA_BRAJA
AccessionPrimary (citable) accession number: Q89T28
Entry history
Integrated into UniProtKB/Swiss-Prot: June 27, 2003
Last sequence update: June 1, 2003
Last modified: January 25, 2012
This is version 56 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families

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