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Protein

UPF0260 protein blr3103

Gene

blr3103

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Names & Taxonomyi

Protein namesi
Recommended name:
UPF0260 protein blr3103UniRule annotation
Gene namesi
Ordered Locus Names:blr3103
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000002526 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002145751 – 171UPF0260 protein blr3103Add BLAST171

Interactioni

Protein-protein interaction databases

STRINGi224911.blr3103.

Structurei

3D structure databases

ProteinModelPortaliQ89QM1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the UPF0260 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108ZZ3. Bacteria.
COG2983. LUCA.
HOGENOMiHOG000276681.
InParanoidiQ89QM1.
KOiK09160.
OMAiTCQCSDY.
OrthoDBiPOG091H04JM.
PhylomeDBiQ89QM1.

Family and domain databases

HAMAPiMF_00676. UPF0260. 1 hit.
InterProiIPR005358. Puta_zinc/iron-chelating_dom.
IPR008228. UCP006173.
[Graphical view]
PfamiPF03692. CxxCxxCC. 1 hit.
[Graphical view]
PIRSFiPIRSF006173. UCP006173. 1 hit.

Sequencei

Sequence statusi: Complete.

Q89QM1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTAAPKRPSG QEGFFWKTKT LEEMSGAEWE SLCDGCGRCC LNKLEDEDTG
60 70 80 90 100
DIYFTHVGCK LLDAGTCGCK DYPNRSDKVP DCVRLTPANV RTLNWLPPSC
110 120 130 140 150
GYKLVAEGRD LYWWHPLVSG DPNTVHEAGV SVRGRVEGSE EEIPDADLED
160 170
HIVQWPALLP KRARLKRRPK D
Length:171
Mass (Da):19,175
Last modified:June 1, 2003 - v1
Checksum:iD1214DBE08BF459C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC48368.1.
RefSeqiNP_769743.1. NC_004463.1.
WP_011085887.1. NZ_CP011360.1.

Genome annotation databases

EnsemblBacteriaiBAC48368; BAC48368; BAC48368.
GeneIDi1053083.
KEGGibja:blr3103.
PATRICi21189662. VBIBraJap65052_3089.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC48368.1.
RefSeqiNP_769743.1. NC_004463.1.
WP_011085887.1. NZ_CP011360.1.

3D structure databases

ProteinModelPortaliQ89QM1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224911.blr3103.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC48368; BAC48368; BAC48368.
GeneIDi1053083.
KEGGibja:blr3103.
PATRICi21189662. VBIBraJap65052_3089.

Phylogenomic databases

eggNOGiENOG4108ZZ3. Bacteria.
COG2983. LUCA.
HOGENOMiHOG000276681.
InParanoidiQ89QM1.
KOiK09160.
OMAiTCQCSDY.
OrthoDBiPOG091H04JM.
PhylomeDBiQ89QM1.

Family and domain databases

HAMAPiMF_00676. UPF0260. 1 hit.
InterProiIPR005358. Puta_zinc/iron-chelating_dom.
IPR008228. UCP006173.
[Graphical view]
PfamiPF03692. CxxCxxCC. 1 hit.
[Graphical view]
PIRSFiPIRSF006173. UCP006173. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiY3103_BRADU
AccessioniPrimary (citable) accession number: Q89QM1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 19, 2003
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Uncharacterized protein families (UPF)
    List of uncharacterized protein family (UPF) entries

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.