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Q89QK7 (TYPH_BRADU) Reviewed, UniProtKB/Swiss-Prot

Last modified July 9, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order

Names and origin

Protein namesRecommended name:
Putative thymidine phosphorylase

EC=2.4.2.4
Alternative name(s):
TdRPase
Gene names
Ordered Locus Names:bll3117
OrganismBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) [Reference proteome] [HAMAP]
Taxonomic identifier224911 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Protein attributes

Sequence length513 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate. HAMAP-Rule MF_00703

Sequence similarities

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 513513Putative thymidine phosphorylase HAMAP-Rule MF_00703
PRO_0000059094

Sequences

Sequence LengthMass (Da)Tools
Q89QK7 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 9CB21EA3DB680722

FASTA51354,664
        10         20         30         40         50         60 
MHPDLPHSQL KIRRVRLDTG RENVVVISRQ SKALRAEIFR GFSRVELRLN GKVLLATLLI 

        70         80         90        100        110        120 
TDDDTLAAQD EIGLSEPAFR RFAEPVGTLV AVTPATPPES LEAVRAKIRG RTLSQAEIGA 

       130        140        150        160        170        180 
IINDLAHYRY SDMEIAAFLI GSASFITSDE LLALTGAMAQ AGTQLVWPDP VVVDKHCIGG 

       190        200        210        220        230        240 
IPGNRTSMVV VPIVAAHGLP IPKTSSRAIT SPAGTADTME VLARVNVGVE EMKAIVSSCN 

       250        260        270        280        290        300 
GCLIWGGHVN LSPADDVLIS VERPLSLDTR EQMVASIMSK KIAAGSTHLL IDIPVGPTAK 

       310        320        330        340        350        360 
VTGAVEAMRL RKLFEFVGDR FGRTVEVITT DGRQPIGNGI GPVLEANDVM AVLGNDKDAP 

       370        380        390        400        410        420 
RDLREKSLRL AAHLLEYDPK LRGGAGYARA RELLDSGAAL KQMQKIIDAQ GPSTCSTELG 

       430        440        450        460        470        480 
SLSFDIKAAH DGTVSAIDCL RLNRLARTAG APLDKGAGIR LFKKIGDHVE QGEPLYRVYA 

       490        500        510 
FDQPEHDLAA SAAAAGNGYA VDGHDALPSK TAS 

« Hide

References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC48382.1.
RefSeqNP_769757.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89QK7.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224911.bll3117.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC48382; BAC48382; BAC48382.
GeneID1053061.
KEGGbja:bll3117.
PATRIC21189690. VBIBraJap65052_3103.

Phylogenomic databases

eggNOGCOG0213.
HOGENOMHOG000252767.
KOK00758.
OrthoDBEOG61ZTGG.
PhylomeDBQ89QK7.

Enzyme and pathway databases

BioCycBJAP224911:GJEJ-3141-MONOMER.

Family and domain databases

Gene3D3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPMF_00703. Thymid_phosp_2.
InterProIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERPTHR10515. PTHR10515. 1 hit.
PfamPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFPIRSF000478. TP_PyNP. 1 hit.
SMARTSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameTYPH_BRADU
AccessionPrimary (citable) accession number: Q89QK7
Entry history
Integrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: June 1, 2003
Last modified: July 9, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families