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Q89QK7

- TYPH_BRADU

UniProt

Q89QK7 - TYPH_BRADU

Protein

Putative thymidine phosphorylase

Gene

bll3117

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 77 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

    GO - Molecular functioni

    1. phosphorylase activity Source: InterPro
    2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

    GO - Biological processi

    1. pyrimidine nucleobase metabolic process Source: InterPro
    2. pyrimidine nucleoside metabolic process Source: InterPro

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Enzyme and pathway databases

    BioCyciBJAP224911:GJEJ-3141-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
    Alternative name(s):
    TdRPaseUniRule annotation
    Gene namesi
    Ordered Locus Names:bll3117
    OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
    Taxonomic identifieri224911 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
    ProteomesiUP000002526: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 513513Putative thymidine phosphorylasePRO_0000059094Add
    BLAST

    Interactioni

    Protein-protein interaction databases

    STRINGi224911.bll3117.

    Structurei

    3D structure databases

    ProteinModelPortaliQ89QK7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0213.
    HOGENOMiHOG000252767.
    KOiK00758.
    OrthoDBiEOG61ZTGG.
    PhylomeDBiQ89QK7.

    Family and domain databases

    Gene3Di3.40.1030.10. 1 hit.
    3.90.1170.30. 1 hit.
    HAMAPiMF_00703. Thymid_phosp_2.
    InterProiIPR000312. Glycosyl_Trfase_fam3.
    IPR017459. Glycosyl_Trfase_fam3_N_dom.
    IPR013102. PYNP_C.
    IPR000053. Pyrmidine_PPase.
    IPR017872. Pyrmidine_PPase_CS.
    IPR028579. Thym_Pase_Put.
    IPR013466. Thymidine/AMP_Pase.
    [Graphical view]
    PANTHERiPTHR10515. PTHR10515. 1 hit.
    PfamiPF02885. Glycos_trans_3N. 1 hit.
    PF00591. Glycos_transf_3. 1 hit.
    PF07831. PYNP_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000478. TP_PyNP. 1 hit.
    SMARTiSM00941. PYNP_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF47648. SSF47648. 1 hit.
    SSF52418. SSF52418. 1 hit.
    SSF54680. SSF54680. 1 hit.
    TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
    PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q89QK7-1 [UniParc]FASTAAdd to Basket

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    MHPDLPHSQL KIRRVRLDTG RENVVVISRQ SKALRAEIFR GFSRVELRLN    50
    GKVLLATLLI TDDDTLAAQD EIGLSEPAFR RFAEPVGTLV AVTPATPPES 100
    LEAVRAKIRG RTLSQAEIGA IINDLAHYRY SDMEIAAFLI GSASFITSDE 150
    LLALTGAMAQ AGTQLVWPDP VVVDKHCIGG IPGNRTSMVV VPIVAAHGLP 200
    IPKTSSRAIT SPAGTADTME VLARVNVGVE EMKAIVSSCN GCLIWGGHVN 250
    LSPADDVLIS VERPLSLDTR EQMVASIMSK KIAAGSTHLL IDIPVGPTAK 300
    VTGAVEAMRL RKLFEFVGDR FGRTVEVITT DGRQPIGNGI GPVLEANDVM 350
    AVLGNDKDAP RDLREKSLRL AAHLLEYDPK LRGGAGYARA RELLDSGAAL 400
    KQMQKIIDAQ GPSTCSTELG SLSFDIKAAH DGTVSAIDCL RLNRLARTAG 450
    APLDKGAGIR LFKKIGDHVE QGEPLYRVYA FDQPEHDLAA SAAAAGNGYA 500
    VDGHDALPSK TAS 513
    Length:513
    Mass (Da):54,664
    Last modified:June 1, 2003 - v1
    Checksum:i9CB21EA3DB680722
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000040 Genomic DNA. Translation: BAC48382.1.
    RefSeqiNP_769757.1. NC_004463.1.

    Genome annotation databases

    EnsemblBacteriaiBAC48382; BAC48382; BAC48382.
    GeneIDi1053061.
    KEGGibja:bll3117.
    PATRICi21189690. VBIBraJap65052_3103.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    BA000040 Genomic DNA. Translation: BAC48382.1 .
    RefSeqi NP_769757.1. NC_004463.1.

    3D structure databases

    ProteinModelPortali Q89QK7.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 224911.bll3117.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAC48382 ; BAC48382 ; BAC48382 .
    GeneIDi 1053061.
    KEGGi bja:bll3117.
    PATRICi 21189690. VBIBraJap65052_3103.

    Phylogenomic databases

    eggNOGi COG0213.
    HOGENOMi HOG000252767.
    KOi K00758.
    OrthoDBi EOG61ZTGG.
    PhylomeDBi Q89QK7.

    Enzyme and pathway databases

    BioCyci BJAP224911:GJEJ-3141-MONOMER.

    Family and domain databases

    Gene3Di 3.40.1030.10. 1 hit.
    3.90.1170.30. 1 hit.
    HAMAPi MF_00703. Thymid_phosp_2.
    InterProi IPR000312. Glycosyl_Trfase_fam3.
    IPR017459. Glycosyl_Trfase_fam3_N_dom.
    IPR013102. PYNP_C.
    IPR000053. Pyrmidine_PPase.
    IPR017872. Pyrmidine_PPase_CS.
    IPR028579. Thym_Pase_Put.
    IPR013466. Thymidine/AMP_Pase.
    [Graphical view ]
    PANTHERi PTHR10515. PTHR10515. 1 hit.
    Pfami PF02885. Glycos_trans_3N. 1 hit.
    PF00591. Glycos_transf_3. 1 hit.
    PF07831. PYNP_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000478. TP_PyNP. 1 hit.
    SMARTi SM00941. PYNP_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF47648. SSF47648. 1 hit.
    SSF52418. SSF52418. 1 hit.
    SSF54680. SSF54680. 1 hit.
    TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
    PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

    Entry informationi

    Entry nameiTYPH_BRADU
    AccessioniPrimary (citable) accession number: Q89QK7
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: August 29, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 77 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3