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Q89QK7

- TYPH_BRADU

UniProt

Q89QK7 - TYPH_BRADU

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Protein

Putative thymidine phosphorylase

Gene

bll3117

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Reviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

Thymidine + phosphate = thymine + 2-deoxy-alpha-D-ribose 1-phosphate.UniRule annotation

GO - Molecular functioni

  1. phosphorylase activity Source: InterPro
  2. thymidine phosphorylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. pyrimidine nucleobase metabolic process Source: InterPro
  2. pyrimidine nucleoside metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Enzyme and pathway databases

BioCyciBJAP224911:GJEJ-3141-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative thymidine phosphorylaseUniRule annotation (EC:2.4.2.4UniRule annotation)
Alternative name(s):
TdRPaseUniRule annotation
Gene namesi
Ordered Locus Names:bll3117
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000002526: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 513513Putative thymidine phosphorylasePRO_0000059094Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi224911.bll3117.

Structurei

3D structure databases

ProteinModelPortaliQ89QK7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the thymidine/pyrimidine-nucleoside phosphorylase family. Type 2 subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0213.
HOGENOMiHOG000252767.
InParanoidiQ89QK7.
KOiK00758.
OrthoDBiEOG61ZTGG.
PhylomeDBiQ89QK7.

Family and domain databases

Gene3Di3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPiMF_00703. Thymid_phosp_2.
InterProiIPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view]
PANTHERiPTHR10515. PTHR10515. 1 hit.
PfamiPF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view]
PIRSFiPIRSF000478. TP_PyNP. 1 hit.
SMARTiSM00941. PYNP_C. 1 hit.
[Graphical view]
SUPFAMiSSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsiTIGR02645. ARCH_P_rylase. 1 hit.
PROSITEiPS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q89QK7-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MHPDLPHSQL KIRRVRLDTG RENVVVISRQ SKALRAEIFR GFSRVELRLN
60 70 80 90 100
GKVLLATLLI TDDDTLAAQD EIGLSEPAFR RFAEPVGTLV AVTPATPPES
110 120 130 140 150
LEAVRAKIRG RTLSQAEIGA IINDLAHYRY SDMEIAAFLI GSASFITSDE
160 170 180 190 200
LLALTGAMAQ AGTQLVWPDP VVVDKHCIGG IPGNRTSMVV VPIVAAHGLP
210 220 230 240 250
IPKTSSRAIT SPAGTADTME VLARVNVGVE EMKAIVSSCN GCLIWGGHVN
260 270 280 290 300
LSPADDVLIS VERPLSLDTR EQMVASIMSK KIAAGSTHLL IDIPVGPTAK
310 320 330 340 350
VTGAVEAMRL RKLFEFVGDR FGRTVEVITT DGRQPIGNGI GPVLEANDVM
360 370 380 390 400
AVLGNDKDAP RDLREKSLRL AAHLLEYDPK LRGGAGYARA RELLDSGAAL
410 420 430 440 450
KQMQKIIDAQ GPSTCSTELG SLSFDIKAAH DGTVSAIDCL RLNRLARTAG
460 470 480 490 500
APLDKGAGIR LFKKIGDHVE QGEPLYRVYA FDQPEHDLAA SAAAAGNGYA
510
VDGHDALPSK TAS
Length:513
Mass (Da):54,664
Last modified:June 1, 2003 - v1
Checksum:i9CB21EA3DB680722
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC48382.1.
RefSeqiNP_769757.1. NC_004463.1.

Genome annotation databases

EnsemblBacteriaiBAC48382; BAC48382; BAC48382.
GeneIDi1053061.
KEGGibja:bll3117.
PATRICi21189690. VBIBraJap65052_3103.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC48382.1 .
RefSeqi NP_769757.1. NC_004463.1.

3D structure databases

ProteinModelPortali Q89QK7.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 224911.bll3117.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAC48382 ; BAC48382 ; BAC48382 .
GeneIDi 1053061.
KEGGi bja:bll3117.
PATRICi 21189690. VBIBraJap65052_3103.

Phylogenomic databases

eggNOGi COG0213.
HOGENOMi HOG000252767.
InParanoidi Q89QK7.
KOi K00758.
OrthoDBi EOG61ZTGG.
PhylomeDBi Q89QK7.

Enzyme and pathway databases

BioCyci BJAP224911:GJEJ-3141-MONOMER.

Family and domain databases

Gene3Di 3.40.1030.10. 1 hit.
3.90.1170.30. 1 hit.
HAMAPi MF_00703. Thymid_phosp_2.
InterProi IPR000312. Glycosyl_Trfase_fam3.
IPR017459. Glycosyl_Trfase_fam3_N_dom.
IPR013102. PYNP_C.
IPR000053. Pyrmidine_PPase.
IPR017872. Pyrmidine_PPase_CS.
IPR028579. Thym_Pase_Put.
IPR013466. Thymidine/AMP_Pase.
[Graphical view ]
PANTHERi PTHR10515. PTHR10515. 1 hit.
Pfami PF02885. Glycos_trans_3N. 1 hit.
PF00591. Glycos_transf_3. 1 hit.
PF07831. PYNP_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF000478. TP_PyNP. 1 hit.
SMARTi SM00941. PYNP_C. 1 hit.
[Graphical view ]
SUPFAMi SSF47648. SSF47648. 1 hit.
SSF52418. SSF52418. 1 hit.
SSF54680. SSF54680. 1 hit.
TIGRFAMsi TIGR02645. ARCH_P_rylase. 1 hit.
PROSITEi PS00647. THYMID_PHOSPHORYLASE. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

Entry informationi

Entry nameiTYPH_BRADU
AccessioniPrimary (citable) accession number: Q89QK7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 29, 2003
Last sequence update: June 1, 2003
Last modified: October 29, 2014
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3