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Protein
Submitted name:

Blr5213 protein

Gene

blr5213

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: GO_Central

GO - Biological processi

  1. DNA ligation Source: GO_Central
  2. DNA recombination Source: InterPro
  3. lagging strand elongation Source: GO_Central
  4. nucleotide-excision repair Source: GO_Central
Complete GO annotation...

Enzyme and pathway databases

BioCyciBJAP224911:GJEJ-5251-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Blr5213 proteinImported
Gene namesi
Ordered Locus Names:blr5213Imported
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)Imported
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
ProteomesiUP000002526 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

  1. chromosome Source: GO_Central
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi224911.blr5213.

Structurei

3D structure databases

ProteinModelPortaliQ89JQ9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222508.
InParanoidiQ89JQ9.
OrthoDBiEOG63NMFT.
PhylomeDBiQ89JQ9.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.

Sequencei

Sequence statusi: Complete.

Q89JQ9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLEARSVDRL PRGAEWQYEP KWDDFRCLLI RSGSRLRMQS KSGRELARYF
60 70 80 90 100
PEVAVAALNL AETQFALDGE LVIPIGKRFS FDDLLQRIHP AASRVKRLAT
110 120 130 140 150
ETPAVFLAFD LLGCGTDDIA GLPLTKRRPA LERFAKRHFK RSEIFVLSPA
160 170 180 190 200
SRNHTDAERW LARAGGGSDG VIAKRIDLPY QTGNREGMRI KRIRSADCVI
210 220 230 240 250
GGFRYGERRT AGRKVVGSLL LGLYDEKGQL NHVGFTSGLK SAAKAALTDQ
260 270 280 290 300
LETIVSDHSF TGNAPGGRSR WSTKRSTEWQ SVKPKFVVEV SYDHSTAGRF
310 320 330
RHGTTIIRWR PDKKPRQCTM DQLEQYSVLP AALLRAPV
Length:338
Mass (Da):37,922
Last modified:June 1, 2003 - v1
Checksum:i8E27957946E4E1D9
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC50478.1.
RefSeqiNP_771853.1. NC_004463.1.

Genome annotation databases

EnsemblBacteriaiBAC50478; BAC50478; BAC50478.
GeneIDi1051482.
KEGGibja:blr5213.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC50478.1.
RefSeqiNP_771853.1. NC_004463.1.

3D structure databases

ProteinModelPortaliQ89JQ9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224911.blr5213.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC50478; BAC50478; BAC50478.
GeneIDi1051482.
KEGGibja:blr5213.

Phylogenomic databases

HOGENOMiHOG000222508.
InParanoidiQ89JQ9.
OrthoDBiEOG63NMFT.
PhylomeDBiQ89JQ9.

Enzyme and pathway databases

BioCyciBJAP224911:GJEJ-5251-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110Imported.

Entry informationi

Entry nameiQ89JQ9_BRADU
AccessioniPrimary (citable) accession number: Q89JQ9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: March 4, 2015
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.