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Protein
Submitted name:

Blr5658 protein

Gene

blr5658

Organism
Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Binding sitei34BiotinCombined sources1
Binding sitei38BiotinCombined sources1
Binding sitei64Biotin; via amide nitrogenCombined sources1
Binding sitei91BiotinCombined sources1
Binding sitei96BiotinCombined sources1
Binding sitei114BiotinCombined sources1
Binding sitei132BiotinCombined sources1

Keywords - Ligandi

BiotinCombined sources

Names & Taxonomyi

Protein namesi
Submitted name:
Blr5658 proteinImported
Gene namesi
Ordered Locus Names:blr5658Imported
OrganismiBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110)Imported
Taxonomic identifieri224911 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium
Proteomesi
  • UP000002526 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_500430228426 – 163Sequence analysisAdd BLAST138

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Disulfide bondi64 ↔ 94Combined sources

Interactioni

Protein-protein interaction databases

STRINGi224911.blr5658.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2Y32X-ray1.78A/B/C/D26-163[»]
4BBOX-ray1.60A/B/C/D26-143[»]
ProteinModelPortaliQ89IH6.
SMRiQ89IH6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni56 – 58Biotin bindingCombined sources3

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

HOGENOMiHOG000125446.
InParanoidiQ89IH6.
OMAiWNGISAG.
OrthoDBiPOG091H2CYO.

Family and domain databases

Gene3Di2.40.128.30. 1 hit.
InterProiIPR005468. Avidin/str.
[Graphical view]
PfamiPF01382. Avidin. 1 hit.
[Graphical view]
SUPFAMiSSF50876. SSF50876. 1 hit.
PROSITEiPS51326. AVIDIN_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q89IH6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRHFNGMLLA MIASTSLIGP LPAYAQSVNW TWTNQYGSTL AITSFNSNTG
60 70 80 90 100
AITGTYTNNA ANSCDEGKPQ GVTGWLAYGN TGTAISFSVN FLGCGSTTVW
110 120 130 140 150
TGQLNNATGF QGLWYLSLAE AVAWNGISAG ADTFTFSSGD KALLTKSGVD
160
LKAGSEKLSN TKK
Length:163
Mass (Da):17,043
Last modified:June 1, 2003 - v1
Checksum:i371E14F5C962620B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC50923.1.
RefSeqiNP_772298.1. NC_004463.1.
WP_011088404.1. NZ_CP011360.1.

Genome annotation databases

EnsemblBacteriaiBAC50923; BAC50923; BAC50923.
GeneIDi1053818.
KEGGibja:blr5658.
PATRICi21195064. VBIBraJap65052_5767.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BA000040 Genomic DNA. Translation: BAC50923.1.
RefSeqiNP_772298.1. NC_004463.1.
WP_011088404.1. NZ_CP011360.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2Y32X-ray1.78A/B/C/D26-163[»]
4BBOX-ray1.60A/B/C/D26-143[»]
ProteinModelPortaliQ89IH6.
SMRiQ89IH6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi224911.blr5658.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAC50923; BAC50923; BAC50923.
GeneIDi1053818.
KEGGibja:blr5658.
PATRICi21195064. VBIBraJap65052_5767.

Phylogenomic databases

HOGENOMiHOG000125446.
InParanoidiQ89IH6.
OMAiWNGISAG.
OrthoDBiPOG091H2CYO.

Family and domain databases

Gene3Di2.40.128.30. 1 hit.
InterProiIPR005468. Avidin/str.
[Graphical view]
PfamiPF01382. Avidin. 1 hit.
[Graphical view]
SUPFAMiSSF50876. SSF50876. 1 hit.
PROSITEiPS51326. AVIDIN_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ89IH6_BRADU
AccessioniPrimary (citable) accession number: Q89IH6
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.