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Unreviewed, UniProtKB/TrEMBL Q89FV4 (Q89FV4_BRAJA)

Last modified June 16, 2009. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information

Names and origin

Protein namesSubmitted name:
    UDP-3-o-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase EMBL BAC51860.1
Gene names
Name: lpxC EMBL BAC51860.1
Ordered Locus Names: bll6595
OrganismBradyrhizobium japonicum [Complete proteome] [HAMAP]
Taxonomic identifier375 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell By similarity. Spearmint SPM004463

Catalytic activity

UDP-3-O-(3-hydroxytetradecanoyl)-N-acetylglucosamine + H2O = UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine + acetate. Spearmint SPM004463

Pathway

Glycolipid biosynthesis; lipid (IV)A biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-D-glucosamine: step 2/6. Spearmint SPM004463

Sequences

Sequence LengthMass (Da)Tools
Q89FV4-1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 9A786E01744379EE

FASTA32034,121
        10         20         30         40         50         60 
MKFSRQTTLR AQATVVGVGV HSGLPVTLTL GPAPVDAGFV FVRTGLEGSD REVQATAEQV 

        70         80         90        100        110        120 
IATDLATVLG DRDGPLVSTA EHVLAALRGM GVDNAAIEID GPEVPIMDGS AAAFIAAIEQ 

       130        140        150        160        170        180 
AGIVTQPAQR RFIQVLKPIS VKIGDSFGEI RPHANGFRAE VEIDFANPVI GRQSYAFDLN 

       190        200        210        220        230        240 
PERFRREVGR ARTFGLMCDV ARLWSAGYAL GASFDNTVVF DDERLLNTEG LRYADECVRH 

       250        260        270        280        290        300 
KVLDVIGDLA LAGLPLLGAY RSVRGGHKLN HAVLTALLAD RTAWRVVEGE AVRRTTRPVA 

       310        320 
ETGRGIVGGR IAAAYGPDVS 

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References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed: 12597275] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: USDA 110.

Cross-references

Sequence databases

BA000040 Genomic DNA. Translation: BAC51860.1.
RefSeqNP_773235.1.

3D structure databases

HSSPHSSP built from PDB template 1P42 based on UniProtKB O67648.
ModBaseSearch...

Genome annotation databases

GeneID1047780.
GenomeReviewsGene locus bll6595 in contig BA000040_GR.
KEGGbja:bll6595.
NMPDRfig|224911.1.peg.6595.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMQ89FV4.
OMAQ89FV4. TGVGVHS.

Enzyme and pathway databases

BioCycBJAP224911:BLL6595-MON.

Family and domain databases

InterProIPR004463. UDP-acyl_GlcNac_deAcase.
IPR011334. UDP-acyl_GlcNac_deAcase_C.
IPR015870. UDP-acyl_N-AcGlcN_deAcase_N.
[Graphical view]
Gene3DG3DSA:3.30.1700.10. UDP-acyl_N-AcGlcN_deAcase_C. 1 hit.
G3DSA:3.30.230.20. UDP-acyl_N-AcGlcN_deAcase_N. 1 hit.
PfamPF03331. LpxC. 1 hit.
[Graphical view]
ProDomPD011499. Lipid_A_LpxC. 1 hit.
[Graphical view] [Entries sharing at least one domain]
TIGRFAMsTIGR00325. lpxC. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ89FV4_BRAJA
AccessionPrimary (citable) accession number: Q89FV4
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 16, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequences · References · Cross-references · Entry information