Bll6730 protein - Bradyrhizobium japonicum (strain USDA 110)

Preferred order of sections

Names and origin

Protein names

Submitted name:
Bll6730 protein EMBL BAC51995.1

Gene names

Ordered Locus Names:

bll6730 EMBL BAC51995.1

Organism

Bradyrhizobium japonicum (strain USDA 110) [Reference proteome] [HAMAP] EMBL BAC51995.1

Taxonomic identifier

224911 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium ›

Protein attributes

Sequence length	389 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

Ontologies

Keywords
Ligand	Magnesium PDB 1TZZ PDB 2DW6 PDB 2DW7 Metal-binding PDB 1TZZ PDB 2DW6 PDB 2DW7
Technical term	3D-structure PDB 1TZZ PDB 2DW6 PDB 2DW7 Complete proteome Reference proteome
Gene Ontology (GO)
Molecular_function	catalytic activity Inferred from electronic annotation. Source: InterPro metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Sites

Active site

184

1

Proton donor/acceptor PDB 2DW7

Active site

322

1

Proton donor/acceptor PDB 2DW7

Metal binding

213

1

Magnesium PDB 1TZZ PDB 2DW6 PDB 2DW7

Metal binding

239

1

Magnesium PDB 1TZZ PDB 2DW6 PDB 2DW7

Metal binding

265

1

Magnesium PDB 1TZZ PDB 2DW6 PDB 2DW7

Site

55

1

Transition state stabilizer PDB 2DW7

Site

182

1

Transition state stabilizer PDB 2DW7

Site

292

1

Important for catalytic activity PDB 2DW7

Site

341

1

Transition state stabilizer PDB 2DW7

Sequences

Sequence

Length

Mass (Da)

Tools

Q89FH0 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 0FE177A59AB2F82C
Show »

FASTA

389

43,058

        10         20         30         40         50         60 
MSVRIVDVRE ITKPISSPIR NAYIDFTKMT TSLVAVVTDV VREGKRVVGY GFNSNGRYGQ 

        70         80         90        100        110        120 
GGLIRERFAS RILEADPKKL LNEAGDNLDP DKVWAAMMIN EKPGGHGERS VAVGTIDMAV 

       130        140        150        160        170        180 
WDAVAKIAGK PLFRLLAERH GVKANPRVFV YAAGGYYYPG KGLSMLRGEM RGYLDRGYNV 

       190        200        210        220        230        240 
VKMKIGGAPI EEDRMRIEAV LEEIGKDAQL AVDANGRFNL ETGIAYAKML RDYPLFWYEE 

       250        260        270        280        290        300 
VGDPLDYALQ AALAEFYPGP MATGENLFSH QDARNLLRYG GMRPDRDWLQ FDCALSYGLC 

       310        320        330        340        350        360 
EYQRTLEVLK THGWSPSRCI PHGGHQMSLN IAAGLGLGGN ESYPDLFQPY GGFPDGVRVE 

       370        380 
NGHITMPDLP GIGFEGKSDL YKEMKALAE

« Hide

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110." Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S. DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: USDA 110.
[2]	"Crystal structure of the protein L1841, unknown member of enolase superfamily from Bradyrhizobium japonicum." Fedorov A.A., Fedorov E.V., Yew W.S., Gerlt J.A., Almo S.C. Submitted (JUL-2004) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.86 ANGSTROMS) IN COMPLEX WITH MAGNESIUM.
[3]	"Evolution of enzymatic activities in the enolase superfamily: D-tartrate dehydratase from Bradyrhizobium japonicum." Yew W.S., Fedorov A.A., Fedorov E.V., Wood B.M., Almo S.C., Gerlt J.A. Biochemistry 45:14598-14608(2006) [PubMed] [Europe PMC] [Abstract] Cited for: X-RAY CRYSTALLOGRAPHY (2.30 ANGSTROMS) IN COMPLEX WITH MAGNESIUM, ACTIVE SITE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

BA000040 Genomic DNA. Translation: BAC51995.1.

RefSeq

NP_773370.1. NC_004463.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1TZZ	X-ray	1.86	A/B	1-389	[»]
2DW6	X-ray	2.30	A/B/C/D	1-389	[»]
2DW7	X-ray	2.50	A/B/C/D/E/F/G/H/I/J/K/L/M/N/O/P	1-389	[»]

ProteinModelPortal

Q89FH0.

ModBase

Search...

Protein-protein interaction databases

STRING

224911.bll6730.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

EnsemblBacteria

BAC51995; BAC51995; BAC51995.

GeneID

1050053.

KEGG

bja:bll6730.

PATRIC

21197324. VBIBraJap65052_6896.

Phylogenomic databases

HOGENOM

HOG000257327.

OMA

VKMKIGG.

ProtClustDB

CLSK868403.

Enzyme and pathway databases

BioCyc

BJAP224911:GJEJ-6781-MONOMER.

SABIO-RK

Q89FH0.

Family and domain databases

InterPro

IPR013342. Mandelate_racemase_C.
IPR001354. MR_MLE.
[Graphical view]

PANTHER

PTHR13794. PTHR13794. 1 hit.

SMART

SM00922. MR_MLE. 1 hit.
[Graphical view]

ProtoNet

Search...

Other

EvolutionaryTrace

Q89FH0.

Entry information

Entry name

Q89FH0_BRAJA

Accession

Primary (citable) accession number: Q89FH0

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)