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Q89FC8 (Q89FC8_BRADU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length892 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
Q89FC8 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 994EDBA838E506B5

FASTA89298,355
        10         20         30         40         50         60 
MLRKLSTYRQ KRDFEKTPEP SGEAAVASSK QRRFVIQKHD ASRLHYDFRL EFDGVFKSWA 

        70         80         90        100        110        120 
VTKGPSLDPH DKRLAVEVED HPLDYGDFEG TIPEGQYGGG TVMLWDRGTW EADDPERGFK 

       130        140        150        160        170        180 
KGDLKFTLHG EKLHGSWVLV RMRNDRDGGK RTNWLLIKHR DEYAREGEDI LAEDKSVASG 

       190        200        210        220        230        240 
RAMAQIAEGK GRAPKPFMLA KGARGKADAV WQSNRVEETK GRTVAPAPRA ALKAGKTVNK 

       250        260        270        280        290        300 
AAKKSATAAT NAKTVADMPD FVAPQLCTPV ERPPAGDGWC HEIKFDGYRV QLRIEDGKAT 

       310        320        330        340        350        360 
LKTRKGLDWT DKFASIAKEA NSLPEAMIDG EIVALDHNGA PNFSSLQAAL SDGKTEDLIF 

       370        380        390        400        410        420 
FAFDLLFAEG RDYRRLPLRE RKSRLKELLE AQKRKSNQIR YVEHFESGGD AVLQSACKLE 

       430        440        450        460        470        480 
LEGVVSKKLD APYRSGRTES WTKAKCRAGH EVVIGGWKTT NGKFRSLMAG VHRGDHLVFV 

       490        500        510        520        530        540 
GMVGTGFGAD TVKRIMPSLK AMEAKDSPFS GKNAPKKTRD VHWLKPELVA EIEFAGFTAD 

       550        560        570        580        590        600 
GNIRQAAFKG LRQDKPAEEV EAETPADTEL ARPSAGKRVP AKSGKKKDAG AAEVMGVVIS 

       610        620        630        640        650        660 
KPDKELWPDG GDGEGVTKLD LARYFEAVGG WMIEHLKGRP CSILRAPDGI GGETFFQRHA 

       670        680        690        700        710        720 
MQGTSNLLEL AKVSGDRKPY LQIDRVEGLA AVAQIGGLEL HPWNCAPDAY DTPGRLVFDL 

       730        740        750        760        770        780 
DPAPDVGFAD VVEAAKQMRQ RLTDVGMESF CKTTGGKGLH VVVPLLHGAR DKVSWKEAKA 

       790        800        810        820        830        840 
FAQGICRWMA DDEPERYLLN MSKKLRNGKI FLDYLRNDRL ATAVAPLSPR ARDGATVSMP 

       850        860        870        880        890 
VTWAQVKGDL DPKRYTVRTV PGLLARSKAW EGYDDAAASI KAAMKKLAGK MR 

« Hide

References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC52038.1.
RefSeqNP_773413.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89FC8.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224911.bll6773.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC52038; BAC52038; BAC52038.
GeneID1050858.
KEGGbja:bll6773.
PATRIC21197414. VBIBraJap65052_6941.

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.
OMALELHPWN.
OrthoDBEOG661H49.
ProtClustDBPRK05972.

Enzyme and pathway databases

BioCycBJAP224911:GJEJ-6824-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ89FC8_BRADU
AccessionPrimary (citable) accession number: Q89FC8
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)