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Q89F76 (Q89F76_BRADU) Unreviewed, UniProtKB/TrEMBL

Last modified December 11, 2013. Version 53. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:bll6825 EMBL BAC52090.1
OrganismBradyrhizobium diazoefficiens (strain JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110) [Reference proteome] [HAMAP] EMBL BAC52090.1
Taxonomic identifier224911 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeBradyrhizobium

Protein attributes

Sequence length364 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Technical term3D-structure PDB 4I1D
Complete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region342 – 3443Sulfate 21 binding PDB 4I1D

Sites

Binding site801Acetate 1 PDB 4I1D
Binding site831Acetate 3 PDB 4I1D
Binding site831Sulfate 1 PDB 4I1D
Binding site831Sulfate 2 PDB 4I1D
Binding site871Sulfate 1 PDB 4I1D
Binding site871Sulfate 2 PDB 4I1D
Binding site871Sulfate 4 PDB 4I1D
Binding site1061Acetate 4 PDB 4I1D
Binding site1091Acetate 6 PDB 4I1D
Binding site1091Sulfate 1 PDB 4I1D
Binding site1091Sulfate 2 PDB 4I1D
Binding site1131Sulfate 1 PDB 4I1D
Binding site1131Sulfate 2 PDB 4I1D
Binding site1321Sulfate 6; via amide nitrogen PDB 4I1D
Binding site1351Sulfate 7 PDB 4I1D
Binding site1451Sulfate 8 PDB 4I1D
Binding site1511Acetate 8 PDB 4I1D
Binding site1621Sulfate 10 PDB 4I1D
Binding site1761Sulfate 11 PDB 4I1D
Binding site1801Sulfate 5 PDB 4I1D
Binding site1801Sulfate 8 PDB 4I1D
Binding site2081Sulfate 12 PDB 4I1D
Binding site2101Acetate 2 PDB 4I1D
Binding site2101Sulfate 13 PDB 4I1D
Binding site2101Sulfate 14 PDB 4I1D
Binding site2191Sulfate 17 PDB 4I1D
Binding site2211Sulfate 16 PDB 4I1D
Binding site2211Sulfate 18 PDB 4I1D
Binding site2351Acetate 9 PDB 4I1D
Binding site2501Sulfate 18 PDB 4I1D
Binding site2501Sulfate 20 PDB 4I1D
Binding site2541Sulfate 18 PDB 4I1D
Binding site2541Sulfate 20 PDB 4I1D
Binding site2611Acetate 10; via carbonyl oxygen PDB 4I1D
Binding site2621Sulfate 10 PDB 4I1D
Binding site3061Sulfate 18; via amide nitrogen PDB 4I1D
Binding site3061Sulfate 20; via amide nitrogen PDB 4I1D
Binding site3061Sulfate 3; via amide nitrogen PDB 4I1D
Binding site3241Sulfate 18 PDB 4I1D
Binding site3241Sulfate 20 PDB 4I1D
Binding site3371Sulfate 10 PDB 4I1D
Binding site3551Acetate 4 PDB 4I1D
Binding site3571Acetate 2 PDB 4I1D
Binding site3571Sulfate 13 PDB 4I1D
Binding site3571Sulfate 14 PDB 4I1D
Binding site3631Sulfate 21 PDB 4I1D

Sequences

Sequence LengthMass (Da)Tools
Q89F76 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: AEA60626F2C3D683

FASTA36439,546
        10         20         30         40         50         60 
MRSVSEITLA MEEARMTTKQ NSALGYALLG AIAFGGTAAN AAEQITFVSQ GGAYQAAQTV 

        70         80         90        100        110        120 
AILDPSAKKL GITINQDSIP DAWPAIKTQV GSGKPIWDVV DTPTGYCLRG GEQGLIEKLD 

       130        140        150        160        170        180 
FSKIPNAAAM PEAYRSPYSV SYEFYSSVLA YSQKTFPKDA PNSWVDFWDV KKFPGRRALR 

       190        200        210        220        230        240 
NHPIATLEAA LMADGVAPDK LYPLDVDRAF KKLEEIKPHI TVWWTSGAQS AQLLNDGEVD 

       250        260        270        280        290        300 
MEMAWNGRVS AVAKEGAKVS FTYNQGILQS TSLCILKGAP NLETAVKFLN EAVDPVHQAN 

       310        320        330        340        350        360 
LPLHIDYGPG NPKAFETNVI KPERAAQLPS EPANAAKQAL MSYAWWSSPA GEAAEKRWAS 


FMQK 

« Hide

References

« Hide 'large scale' references
[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.
[2]"Structural and functional characterization of solute binding proteins for aromatic compounds derived from lignin: p-coumaric acid and related aromatic acids."
Tan K., Chang C., Cuff M., Osipiuk J., Landorf E., Mack J.C., Zerbs S., Joachimiak A., Collart F.R.
Proteins 81:1709-1726(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (2.20 ANGSTROMS) OF 44-364 IN COMPLEX WITH ACETATE AND SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC52090.1.
RefSeqNP_773465.1. NC_004463.1.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4I1DX-ray2.20A/B/C/D44-364[»]
ProteinModelPortalQ89F76.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224911.bll6825.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC52090; BAC52090; BAC52090.
GeneID1051169.
KEGGbja:bll6825.
PATRIC21197525. VBIBraJap65052_6996.

Phylogenomic databases

HOGENOMHOG000159582.
KOK02055.
OMADTKTYPG.
OrthoDBEOG63JR62.
ProtClustDBCLSK522457.

Enzyme and pathway databases

BioCycBJAP224911:GJEJ-6876-MONOMER.

Family and domain databases

ProtoNetSearch...

Entry information

Entry nameQ89F76_BRADU
AccessionPrimary (citable) accession number: Q89F76
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: December 11, 2013
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)