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Q89DV1 (Q89DV1_BRADU) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 73. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length335 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
   Molecular functionIsomerase RuleBase RU003886
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processpseudouridine synthesis

Inferred from electronic annotation. Source: InterPro

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q89DV1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 31E2BA7F9D99840A

FASTA33535,940
        10         20         30         40         50         60 
MENSGSAQRL EVVVAGDEGS ARLDRVLAAR LPDLSRSRLK ALILAGAVSL KASAVRDPAY 

        70         80         90        100        110        120 
HVSHGDTIII DVPEAAPAEP KGEEIALDIV FEDDDIIVIN KPRGLVVHPA AGHETGTLVN 

       130        140        150        160        170        180 
ALIAHCGSTL SGIGGVRRPG IVHRLDKDTT GLMVVAKNDL AHASLSAQFA DHGRTGAMRR 

       190        200        210        220        230        240 
GYMAFAWGVP GRHRGTVDAP IDRHPYAREK MAVRQGGREA VTHWEILESF PGRDGKPIAA 

       250        260        270        280        290        300 
LLACELETGR THQIRVHLAH IGHPLMGDAV YGPHFKTKAN QLAPESQAAL ATLGRQALHA 

       310        320        330 
YLLVLEHPRT GELLHWEAPL PEDLLLLRSA LKAAL 

« Hide

References

[1]"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110."
Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S.
DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10833 / IAM 13628 / NBRC 14792 / USDA 110.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
BA000040 Genomic DNA. Translation: BAC52601.1.
RefSeqNP_773976.1. NC_004463.1.

3D structure databases

ProteinModelPortalQ89DV1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING224911.blr7336.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAC52601; BAC52601; BAC52601.
GeneID1054747.
KEGGbja:blr7336.
PATRIC21198611. VBIBraJap65052_7537.

Phylogenomic databases

HOGENOMHOG000275919.
KOK06180.
OrthoDBEOG6P070X.
PhylomeDBQ89DV1.

Enzyme and pathway databases

BioCycBJAP224911:GJEJ-7390-MONOMER.

Family and domain databases

Gene3D3.10.290.10. 1 hit.
InterProIPR020103. PsdUridine_synth_cat_dom.
IPR006225. PsdUridine_synth_RluC/D.
IPR006224. PsdUridine_synth_RluC/D_CS.
IPR006145. PsdUridine_synth_RsuA/RluD.
IPR002942. S4_RNA-bd.
[Graphical view]
PfamPF00849. PseudoU_synth_2. 1 hit.
PF01479. S4. 1 hit.
[Graphical view]
SMARTSM00363. S4. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00005. rluA_subfam. 1 hit.
PROSITEPS01129. PSI_RLU. 1 hit.
PS50889. S4. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ89DV1_BRADU
AccessionPrimary (citable) accession number: Q89DV1
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 11, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)