Q89DV1 (Q89DV1_BRAJA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Pseudouridine synthase RuleBase RU003886
EC=5.4.99.- RuleBase RU003886

Gene names

Ordered Locus Names:

blr7336

Organism

Bradyrhizobium japonicum (strain USDA 110) [Reference proteome] [HAMAP]

Taxonomic identifier

224911 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › Rhizobiales › Bradyrhizobiaceae › Bradyrhizobium › Bradyrhizobium japonicum

Protein attributes

Sequence length	335 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the pseudouridine synthase rluA family. RuleBase RU004243

Ontologies

Keywords
Molecular function	Isomerase RuleBase RU003886
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	pseudouridine synthesis Inferred from electronic annotation. Source: InterPro
Molecular_function	RNA binding Inferred from electronic annotation. Source: InterPro pseudouridine synthase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q89DV1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 31E2BA7F9D99840A	FASTA	335	35,940
	10 20 30 40 50 60 MENSGSAQRL EVVVAGDEGS ARLDRVLAAR LPDLSRSRLK ALILAGAVSL KASAVRDPAY 70 80 90 100 110 120 HVSHGDTIII DVPEAAPAEP KGEEIALDIV FEDDDIIVIN KPRGLVVHPA AGHETGTLVN 130 140 150 160 170 180 ALIAHCGSTL SGIGGVRRPG IVHRLDKDTT GLMVVAKNDL AHASLSAQFA DHGRTGAMRR 190 200 210 220 230 240 GYMAFAWGVP GRHRGTVDAP IDRHPYAREK MAVRQGGREA VTHWEILESF PGRDGKPIAA 250 260 270 280 290 300 LLACELETGR THQIRVHLAH IGHPLMGDAV YGPHFKTKAN QLAPESQAAL ATLGRQALHA 310 320 330 YLLVLEHPRT GELLHWEAPL PEDLLLLRSA LKAAL

References

[1]

"Complete genomic sequence of nitrogen-fixing symbiotic bacterium Bradyrhizobium japonicum USDA110." Kaneko T., Nakamura Y., Sato S., Minamisawa K., Uchiumi T., Sasamoto S., Watanabe A., Idesawa K., Iriguchi M., Kawashima K., Kohara M., Matsumoto M., Shimpo S., Tsuruoka H., Wada T., Yamada M., Tabata S. DNA Res. 9:189-197(2002) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: USDA 110.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BA000040 Genomic DNA. Translation: BAC52601.1.
RefSeq	NP_773976.1. NC_004463.1.
3D structure databases
HSSP	HSSP built from PDB template 1PRZ based on UniProtKB Q8X9F0.
ProteinModelPortal	Q89DV1.
ModBase	Search...
Protein-protein interaction databases
STRING	224911.blr7336.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAC52601; BAC52601; BAC52601.
GeneID	1054747.
KEGG	bja:blr7336.
PATRIC	21198611. VBIBraJap65052_7537.
Phylogenomic databases
HOGENOM	HOG000275919.
KO	K06180.
OMA	KTIPAQT.
Enzyme and pathway databases
BioCyc	BJAP224911:GJEJ-7390-MONOMER.
Family and domain databases
Gene3D	3.10.290.10. 1 hit.
InterPro	IPR020103. PsdUridine_synth_cat_dom. IPR006225. PsdUridine_synth_RluC/D. IPR006224. PsdUridine_synth_RluC/D_CS. IPR006145. PsdUridine_synth_RsuA/RluD. IPR002942. S4_RNA-bd. [Graphical view]
Pfam	PF00849. PseudoU_synth_2. 1 hit. PF01479. S4. 1 hit. [Graphical view]
SMART	SM00363. S4. 1 hit. [Graphical view]
SUPFAM	SSF55120. PsdUridine_synth_cat_dom. 1 hit.
TIGRFAMs	TIGR00005. rluA_subfam. 1 hit.
PROSITE	PS01129. PSI_RLU. 1 hit. PS50889. S4. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q89DV1_BRAJA

Accession

Primary (citable) accession number: Q89DV1

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 67 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)