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Protein
Submitted name:

Gag

Gene

gag

Organism
Avian myeloblastosis-associated virus type 2
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionHydrolaseSAAS annotation
LigandMetal-binding, Zinc

Protein family/group databases

MEROPSiA02.015.

Names & Taxonomyi

Protein namesi
Submitted name:
GagImported
Gene namesi
Name:gagImported
OrganismiAvian myeloblastosis-associated virus type 2Imported
Taxonomic identifieri31670 [NCBI]
Taxonomic lineageiVirusesRetro-transcribing virusesRetroviridaeOrthoretrovirinaeAlpharetrovirusunclassified Alpharetrovirus

Subcellular locationi

  • Virion SAAS annotation

GO - Cellular componenti

Keywords - Cellular componenti

VirionSAAS annotation

Structurei

3D structure databases

ProteinModelPortaliQ89810.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini509 – 524CCHC-typeInterPro annotationAdd BLAST16
Domaini609 – 690Peptidase A2InterPro annotationAdd BLAST82

Keywords - Domaini

Zinc-fingerSAAS annotation

Family and domain databases

CDDicd05482. HIV_retropepsin_like. 1 hit.
Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
2.40.70.10. 1 hit.
4.10.60.10. 2 hits.
InterProiView protein in InterPro
IPR001969. Aspartic_peptidase_AS.
IPR004028. Gag_M.
IPR000721. Gag_p24.
IPR001995. Peptidase_A2_cat.
IPR021109. Peptidase_aspartic_dom.
IPR034170. Retropepsin-like_cat_dom.
IPR018061. Retropepsins.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00077. RVP. 1 hit.
PF00098. zf-CCHC. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871. Gag_M. 1 hit.
SMARTiView protein in SMART
SM00343. ZnF_C2HC. 2 hits.
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF50630. SSF50630. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50175. ASP_PROT_RETROV. 1 hit.
PS00141. ASP_PROTEASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.

Sequencei

Sequence statusi: Complete.

Q89810-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAVIKVISS ACKTYCGKTS PSKKEIGAML SLLQKEGLLM SPSDLYSPGS
60 70 80 90 100
WDPITAALSQ RAMVLGKSGE LKTWGLVLGA LKAAREEQVT SEQAKFWLGL
110 120 130 140 150
GGGRVSPPGP ECIEKPATER RTDKGEEVGE TTAHGDAKMA PEETATPKTV
160 170 180 190 200
GTSCYHCGTA IGCSCATASA PPPPYVGSGL YPSLAGVGEQ QGQEGDTPRG
210 220 230 240 250
AEQPRAEPGH AGLAPGPALT DWARVREELA STGPPVVAMP VVIKTEGPAW
260 270 280 290 300
TPLEPKLITR LADTVRTKGL RSPITMAEVE ALMSSPLLPH DVTNLMRVIL
310 320 330 340 350
GPAPYALWMD AWGVQLQTVI AAATRDPRHP ANGQGRGERT NLDRLKGLAD
360 370 380 390 400
GMVGNPQGQA ALLRPGELVA ITAAALQAFR EVARLAEPAG PWADITQGPS
410 420 430 440 450
EPFVDFANRL IKAVEGSDLP PSARAPVIID CFRQKSQPDI QQLIRAAPST
460 470 480 490 500
LTTPGEIIKY VLDRQKTAPL TDQGIAAAMS SAIQPLVMAV VNRERDGQTG
510 520 530 540 550
SGGRARGLCY TCGSPGHYQA QCPKKRKSGN SRERCQLCDG MGHNAKQCRK
560 570 580 590 600
RDGNQGQRPG RGLSSGPWPV SEQPAVSLAM TMEHKDRPLV RVILTNTGSH
610 620 630 640 650
PVKQRSVYIT ALLDSGADIT IISEEDWPAD WPVMEAANPQ IHGIGGGIPM
660 670 680 690 700
RKSRDMIEVG VINRDGSLER PLLLFPAVAM VRGSILGRDC LQGLGLRLTN

L
Length:701
Mass (Da):74,450
Last modified:November 1, 1996 - v1
Checksum:i3DD33265BAB46447
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10924 Genomic DNA. Translation: AAA46305.1.
PIRiD48613.

Keywords - Coding sequence diversityi

Ribosomal frameshiftingSAAS annotation

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L10924 Genomic DNA. Translation: AAA46305.1.
PIRiD48613.

3D structure databases

ProteinModelPortaliQ89810.
ModBaseiSearch...
MobiDBiSearch...

Protein family/group databases

MEROPSiA02.015.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

CDDicd05482. HIV_retropepsin_like. 1 hit.
Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
2.40.70.10. 1 hit.
4.10.60.10. 2 hits.
InterProiView protein in InterPro
IPR001969. Aspartic_peptidase_AS.
IPR004028. Gag_M.
IPR000721. Gag_p24.
IPR001995. Peptidase_A2_cat.
IPR021109. Peptidase_aspartic_dom.
IPR034170. Retropepsin-like_cat_dom.
IPR018061. Retropepsins.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR010999. Retrovr_matrix.
IPR001878. Znf_CCHC.
PfamiView protein in Pfam
PF00607. Gag_p24. 1 hit.
PF02813. Retro_M. 1 hit.
PF00077. RVP. 1 hit.
PF00098. zf-CCHC. 1 hit.
ProDomiView protein in ProDom or Entries sharing at least one domain
PD002871. Gag_M. 1 hit.
SMARTiView protein in SMART
SM00343. ZnF_C2HC. 2 hits.
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47836. SSF47836. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF50630. SSF50630. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiView protein in PROSITE
PS50175. ASP_PROT_RETROV. 1 hit.
PS00141. ASP_PROTEASE. 1 hit.
PS50158. ZF_CCHC. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ89810_AVIMA
AccessioniPrimary (citable) accession number: Q89810
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: May 10, 2017
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.