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Q88R85 (RIMK_PSEPK) Reviewed, UniProtKB/Swiss-Prot

Last modified March 19, 2014. Version 76. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Probable alpha-L-glutamate ligase

EC=6.3.2.-
Gene names
Name:rimK
Ordered Locus Names:PP_0248
OrganismPseudomonas putida (strain KT2440) [Complete proteome] [HAMAP]
Taxonomic identifier160488 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length301 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Binds 2 magnesium or manganese ions per subunit By similarity.

Sequence similarities

Belongs to the RimK family.

Contains 1 ATP-grasp domain.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 301301Probable alpha-L-glutamate ligase HAMAP-Rule MF_01552
PRO_0000205473

Regions

Domain104 – 287184ATP-grasp
Nucleotide binding178 – 1792ATP By similarity
Nucleotide binding211 – 2133ATP By similarity

Sites

Metal binding2481Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 1 By similarity
Metal binding2601Magnesium or manganese 2 By similarity
Metal binding2621Magnesium or manganese 2 By similarity
Binding site1411ATP By similarity
Binding site1871ATP By similarity

Sequences

Sequence LengthMass (Da)Tools
Q88R85 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 78894C76F30E69D7

FASTA30132,629
        10         20         30         40         50         60 
MKIAVLSRNP RLYSTRRLVE AGTQRGHEMV VIDTLRAYMN IASHKPQIHY RGKPLEGFDA 

        70         80         90        100        110        120 
VIPRIGASVT FYGCAVLRQF EMMGVYPLNE SVAIARSRDK LRSLQLLSRR GIGLPITGFA 

       130        140        150        160        170        180 
HSPDDIPDLI QMVNGAPLVI KVLEGTQGIG VVLCETPQAA ESVIEAFMGL KQNIMVQEYI 

       190        200        210        220        230        240 
KEAGGADIRC FVVGDKVIAS MKRQAKPGEF RSNLHRGGVA SLIKITPEER ITAIRAAKVM 

       250        260        270        280        290        300 
GLSVAGVDIL RSNHGPLVME VNSSPGLEGI EVTTGKNVAG MIIEHLEKNG GPNQTRTKGK 


G 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE015451 Genomic DNA. Translation: AAN65880.1.
RefSeqNP_742416.1. NC_002947.3.

3D structure databases

ProteinModelPortalQ88R85.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING160488.PP_0248.

Protocols and materials databases

DNASU1043821.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAN65880; AAN65880; PP_0248.
GeneID1043821.
KEGGppu:PP_0248.
PATRIC19938508. VBIPsePut30601_0265.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG0189.
HOGENOMHOG000293092.
KOK05844.
OMACREPRLY.
OrthoDBEOG6DZDX8.
ProtClustDBCLSK869184.

Enzyme and pathway databases

BioCycPPUT160488:GIXO-256-MONOMER.

Family and domain databases

Gene3D3.30.1490.20. 1 hit.
3.30.470.20. 1 hit.
3.40.50.20. 1 hit.
HAMAPMF_01552. RimK.
InterProIPR011761. ATP-grasp.
IPR013651. ATP-grasp_RimK-type.
IPR013815. ATP_grasp_subdomain_1.
IPR013816. ATP_grasp_subdomain_2.
IPR016185. PreATP-grasp_dom.
IPR023533. Ribosomal_S6_modifier_RimK.
IPR004666. RpS6_RimK/Lys_biosynth_LsyX.
[Graphical view]
PfamPF08443. RimK. 1 hit.
[Graphical view]
TIGRFAMsTIGR00768. rimK_fam. 1 hit.
PROSITEPS50975. ATP_GRASP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameRIMK_PSEPK
AccessionPrimary (citable) accession number: Q88R85
Entry history
Integrated into UniProtKB/Swiss-Prot: December 20, 2005
Last sequence update: June 1, 2003
Last modified: March 19, 2014
This is version 76 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

SIMILARITY comments

Index of protein domains and families