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Q88NU9

- Q88NU9_PSEPK

UniProt

Q88NU9 - Q88NU9_PSEPK

Protein
Submitted name:

DNA ligase, ATP-dependent, putative

Gene

PP_1105

Organism
Pseudomonas putida (strain KT2440)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 68 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciPPUT160488:GIXO-1137-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    DNA ligase, ATP-dependent, putativeImported
    Gene namesi
    Ordered Locus Names:PP_1105Imported
    OrganismiPseudomonas putida (strain KT2440)Imported
    Taxonomic identifieri160488 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000556: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi160488.PP_1105.

    Structurei

    3D structure databases

    ProteinModelPortaliQ88NU9.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG1793.
    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiRVWLWSR.
    OrthoDBiEOG6Q8HXT.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q88NU9-1 [UniParc]FASTAAdd to Basket

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    MKAFATLFLR LDATTSSNAK LEALRDYFDM APAEDAAWAV YFLAGGRPRQ    50
    LVPTRLLREL ATTLAGLPDW LFEESYQAVG DLAETISLLL PLHADGNEEG 100
    LATWVEQHLL PLRGLTPEQV RQRLPPLWAR LDRASLMLCL KLITGSFRVG 150
    VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD IGHRPTAASY QRLIAPESAD 200
    EHNQRGGQPY PFFLAHPLQV SSDQFDTLLG PPSDWQIEWK WDGIRAQVVK 250
    RDGQLWVWSR GEELVTERFP ELHGLAQTLP DGVVLDGEIL VWKPGETETE 300
    LAVQPFALLQ QRIGRKTLGK KLLNDAPVVL QAYDLLEWQG EDWRSRPQHE 350
    RRSQLEHLVD EHPLAPVLLS PLLQGPDWAD LARQREQSRS LGVEGLMLKQ 400
    REALYGVGRT KDMGIWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA 450
    VWDAPAGTPG RALVPFAKAY SGLSDEEMRK VDAIIRKTTV ETFGPVRSVT 500
    PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE ADDLATLQAL 550
    LA 552
    Length:552
    Mass (Da):62,122
    Last modified:June 1, 2003 - v1
    Checksum:iEBD3FC81539B5694
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN66730.1.
    RefSeqiNP_743266.1. NC_002947.3.

    Genome annotation databases

    EnsemblBacteriaiAAN66730; AAN66730; PP_1105.
    GeneIDi1045250.
    KEGGippu:PP_1105.
    PATRICi19940370. VBIPsePut30601_1171.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN66730.1 .
    RefSeqi NP_743266.1. NC_002947.3.

    3D structure databases

    ProteinModelPortali Q88NU9.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 160488.PP_1105.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAN66730 ; AAN66730 ; PP_1105 .
    GeneIDi 1045250.
    KEGGi ppu:PP_1105.
    PATRICi 19940370. VBIPsePut30601_1171.

    Phylogenomic databases

    eggNOGi COG1793.
    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi RVWLWSR.
    OrthoDBi EOG6Q8HXT.

    Enzyme and pathway databases

    BioCyci PPUT160488:GIXO-1137-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KT2440Imported.

    Entry informationi

    Entry nameiQ88NU9_PSEPK
    AccessioniPrimary (citable) accession number: Q88NU9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 68 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3