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Q88NU9

- Q88NU9_PSEPK

UniProt

Q88NU9 - Q88NU9_PSEPK

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Protein
Submitted name: DNA ligase, ATP-dependent, putative
Gene
PP_1105
Organism
Pseudomonas putida (strain KT2440)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-1137-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
DNA ligase, ATP-dependent, putativeImported
Gene namesi
Ordered Locus Names:PP_1105Imported
OrganismiPseudomonas putida (strain KT2440)Imported
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000556: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi160488.PP_1105.

Structurei

3D structure databases

ProteinModelPortaliQ88NU9.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000036007.
KOiK01971.
OMAiRVWLWSR.
OrthoDBiEOG6Q8HXT.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q88NU9-1 [UniParc]FASTAAdd to Basket

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MKAFATLFLR LDATTSSNAK LEALRDYFDM APAEDAAWAV YFLAGGRPRQ    50
LVPTRLLREL ATTLAGLPDW LFEESYQAVG DLAETISLLL PLHADGNEEG 100
LATWVEQHLL PLRGLTPEQV RQRLPPLWAR LDRASLMLCL KLITGSFRVG 150
VSKLLVTRAL AQLAGLDAKR VAQRLVGYTD IGHRPTAASY QRLIAPESAD 200
EHNQRGGQPY PFFLAHPLQV SSDQFDTLLG PPSDWQIEWK WDGIRAQVVK 250
RDGQLWVWSR GEELVTERFP ELHGLAQTLP DGVVLDGEIL VWKPGETETE 300
LAVQPFALLQ QRIGRKTLGK KLLNDAPVVL QAYDLLEWQG EDWRSRPQHE 350
RRSQLEHLVD EHPLAPVLLS PLLQGPDWAD LARQREQSRS LGVEGLMLKQ 400
REALYGVGRT KDMGIWWKWK IDPFSVDAVL IYAQRGHGRR ASLYSDYTFA 450
VWDAPAGTPG RALVPFAKAY SGLSDEEMRK VDAIIRKTTV ETFGPVRSVT 500
PTLVFELGFE GIALSRRHKS GIAVRFPRML RWRLDKPVEE ADDLATLQAL 550
LA 552
Length:552
Mass (Da):62,122
Last modified:June 1, 2003 - v1
Checksum:iEBD3FC81539B5694
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN66730.1.
RefSeqiNP_743266.1. NC_002947.3.

Genome annotation databases

EnsemblBacteriaiAAN66730; AAN66730; PP_1105.
GeneIDi1045250.
KEGGippu:PP_1105.
PATRICi19940370. VBIPsePut30601_1171.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN66730.1 .
RefSeqi NP_743266.1. NC_002947.3.

3D structure databases

ProteinModelPortali Q88NU9.
ModBasei Search...

Protein-protein interaction databases

STRINGi 160488.PP_1105.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN66730 ; AAN66730 ; PP_1105 .
GeneIDi 1045250.
KEGGi ppu:PP_1105.
PATRICi 19940370. VBIPsePut30601_1171.

Phylogenomic databases

eggNOGi COG1793.
HOGENOMi HOG000036007.
KOi K01971.
OMAi RVWLWSR.
OrthoDBi EOG6Q8HXT.

Enzyme and pathway databases

BioCyci PPUT160488:GIXO-1137-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KT2440Imported.

Entry informationi

Entry nameiQ88NU9_PSEPK
AccessioniPrimary (citable) accession number: Q88NU9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 14, 2014
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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