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Q88LV1 (Q88LV1_PSEPK) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 58. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:PP_1826 EMBL AAN67445.1
OrganismPseudomonas putida (strain KT2440) [Complete proteome] [HAMAP] EMBL AAN67445.1
Taxonomic identifier160488 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length196 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   Molecular functionHydrolase EMBL AAN67445.1
   Technical term3D-structure PDB 4H17
Complete proteome
Gene Ontology (GO)
   Molecular_functionhydrolase activity

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Region70 – 723Sulfate 5 binding PDB 4H17
Region106 – 1083Sulfate 1 binding PDB 4H17
Region106 – 1083Sulfate 7 binding PDB 4H17
Region131 – 1355Sulfate 4 binding PDB 4H17

Sites

Binding site131Sulfate 2 PDB 4H17
Binding site131Sulfate 3 PDB 4H17
Binding site291Sulfate 4 PDB 4H17
Binding site341Sulfate 4 PDB 4H17
Binding site701Sulfate 4 PDB 4H17
Binding site731Sulfate 6 PDB 4H17
Binding site771Sulfate 6 PDB 4H17
Binding site1031Sulfate 5 PDB 4H17
Binding site1421Sulfate 1 PDB 4H17
Binding site1421Sulfate 4 PDB 4H17
Binding site1421Sulfate 7 PDB 4H17
Binding site1461Sulfate 7 PDB 4H17

Sequences

Sequence LengthMass (Da)Tools
Q88LV1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: E05DD7BC07AD83B5

FASTA19621,284
        10         20         30         40         50         60 
MSVPTTMFRL TGRDYPPAKL SHASLIIIDA QKEYLSGPLK LSGMDEAVAN IARLLDAARK 

        70         80         90        100        110        120 
SGRPIIHVRH LGTVGGRFDP QGPAGQFIPG LEPLEGEIVI EKRMPNAFKN TKLHETLQEL 

       130        140        150        160        170        180 
GHLDLIVCGF MSHSSVSTTV RRAKDYGYRC TLVEDASATR DLAFKDGVIP AAQIHQCEMA 

       190 
VMADNFACVA PTASLI 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440."
Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R., Nelson W., White O. expand/collapse author list , Peterson J., Khouri H., Hance I., Chris Lee P., Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Dusterhoft A., Tummler B., Fraser C.M.
Environ. Microbiol. 4:799-808(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KT2440 EMBL AAN67445.1.
[2]"Crystal structure of an isochorismatase (PP1826) from Pseudomonas putida KT2440 at 1.60 A resolution."
Joint Center for Structural Genomics (JCSG)
Submitted (SEP-2012) to the PDB data bank
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH SULFATE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE015451 Genomic DNA. Translation: AAN67445.1.
RefSeqNP_743981.1. NC_002947.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
4H17X-ray1.60A/B1-196[»]
ProteinModelPortalQ88LV1.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING160488.PP_1826.

Protocols and materials databases

DNASU1043275.
StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAN67445; AAN67445; PP_1826.
GeneID1043275.
KEGGppu:PP_1826.
PATRIC19941904. VBIPsePut30601_1926.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG1335.
HOGENOMHOG000078670.
OMATVRATKD.
OrthoDBEOG6BS8QG.
ProtClustDBCLSK866732.

Enzyme and pathway databases

BioCycPPUT160488:GIXO-1871-MONOMER.

Family and domain databases

Gene3D3.40.50.850. 1 hit.
InterProIPR000868. Isochorismatase-like.
[Graphical view]
PfamPF00857. Isochorismatase. 1 hit.
[Graphical view]
SUPFAMSSF52499. SSF52499. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ88LV1_PSEPK
AccessionPrimary (citable) accession number: Q88LV1
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: April 16, 2014
This is version 58 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)