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Protein
Submitted name:

Mg-dependent cytoplasmic DNase / RNase

Gene

tatD

Organism
Pseudomonas putida (strain KT2440)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Metal bindingi97 – 971ZincCombined sources
Metal bindingi133 – 1331Zinc; via pros nitrogenCombined sources
Metal bindingi158 – 1581Zinc; via tele nitrogenCombined sources

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

HydrolaseImported

Keywords - Ligandi

Metal-bindingCombined sources, ZincCombined sources

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-2383-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Mg-dependent cytoplasmic DNase / RNaseImported (EC:3.1.21.-Imported)
Gene namesi
Name:tatDImported
Ordered Locus Names:PP_2311Imported
OrganismiPseudomonas putida (strain KT2440)Imported
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000556 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi160488.PP_2311.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3RCMX-ray2.05A1-265[»]
ProteinModelPortaliQ88KH9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4105F8V. Bacteria.
COG0084. LUCA.
HOGENOMiHOG000201523.
KOiK03424.
OMAiCHELDES.

Family and domain databases

InterProiIPR018228. DNase_TatD-rel_CS.
IPR032466. Metal_Hydrolase.
IPR001130. TatD_family.
[Graphical view]
PANTHERiPTHR10060. PTHR10060. 1 hit.
PfamiPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFiPIRSF005902. DNase_TatD. 1 hit.
SUPFAMiSSF51556. SSF51556. 1 hit.
PROSITEiPS01090. TATD_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q88KH9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MQLIDIGVNL TNSSFHDQQA AIVERALEAG VTQMLLTGTS LAVSEQALEL
60 70 80 90 100
CQQLDASGAH LFATAGVHPH DAKAWDTDSE RQLRLLLSEP RVRAVGECGL
110 120 130 140 150
DFNRDFSPRP LQEKALEAQL TLAAQLRLPV FLHERDASER LLAILKDYRD
160 170 180 190 200
HLTGAVVHCF TGEREALFAY LDLDLHIGIT GWICDERRGT HLHPLVGNIP
210 220 230 240 250
EGRLMLESDA PYLLPRSLRP KPKSGRNEPA FLPEVLREVA LHRGESAEHT
260
AAHTTATARD FFQLP
Length:265
Mass (Da):29,409
Last modified:June 1, 2003 - v1
Checksum:i423EB51494335FDE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN67924.1.
RefSeqiNP_744460.1. NC_002947.4.
WP_010953279.1. NC_002947.4.

Genome annotation databases

EnsemblBacteriaiAAN67924; AAN67924; PP_2311.
GeneIDi1045298.
KEGGippu:PP_2311.
PATRICi19943002. VBIPsePut30601_2448.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN67924.1.
RefSeqiNP_744460.1. NC_002947.4.
WP_010953279.1. NC_002947.4.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3RCMX-ray2.05A1-265[»]
ProteinModelPortaliQ88KH9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi160488.PP_2311.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAN67924; AAN67924; PP_2311.
GeneIDi1045298.
KEGGippu:PP_2311.
PATRICi19943002. VBIPsePut30601_2448.

Phylogenomic databases

eggNOGiENOG4105F8V. Bacteria.
COG0084. LUCA.
HOGENOMiHOG000201523.
KOiK03424.
OMAiCHELDES.

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-2383-MONOMER.

Family and domain databases

InterProiIPR018228. DNase_TatD-rel_CS.
IPR032466. Metal_Hydrolase.
IPR001130. TatD_family.
[Graphical view]
PANTHERiPTHR10060. PTHR10060. 1 hit.
PfamiPF01026. TatD_DNase. 1 hit.
[Graphical view]
PIRSFiPIRSF005902. DNase_TatD. 1 hit.
SUPFAMiSSF51556. SSF51556. 1 hit.
PROSITEiPS01090. TATD_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ88KH9_PSEPK
AccessioniPrimary (citable) accession number: Q88KH9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: September 7, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.