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Q88H32

- Q88H32_PSEPK

UniProt

Q88H32 - Q88H32_PSEPK

Protein
Submitted name:

Ornithine cyclodeaminase

Gene

PP_3533

Organism
Pseudomonas putida (strain KT2440)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli
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    • History
      Entry version 71 (01 Oct 2014)
      Sequence version 1 (01 Jun 2003)
      Previous versions | rss
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    Functioni

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sitei56 – 561Important for catalytic activityImported
    Binding sitei84 – 841NADImported
    Binding sitei112 – 1121NADImported
    Binding sitei161 – 1611NADImported
    Binding sitei202 – 2021NAD; via carbonyl oxygenImported
    Active sitei228 – 2281Proton donor/acceptorImported
    Binding sitei232 – 2321NADImported
    Binding sitei331 – 3311NADImported

    Regions

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Nucleotide bindingi139 – 1402NADImported
    Nucleotide bindingi225 – 2284NADImported
    Nucleotide bindingi293 – 2942NADImported

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. nucleotide binding Source: UniProtKB-KW

    Keywords - Ligandi

    NADImported, Nucleotide-bindingImported

    Enzyme and pathway databases

    BioCyciPPUT160488:GIXO-3609-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Ornithine cyclodeaminaseImported
    Gene namesi
    Ordered Locus Names:PP_3533Imported
    OrganismiPseudomonas putida (strain KT2440)Imported
    Taxonomic identifieri160488 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
    ProteomesiUP000000556: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi160488.PP_3533.

    Structurei

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    EntryMethodResolution (Å)ChainPositionsPDBsum
    1U7HX-ray1.80A/B1-350[»]
    1X7DX-ray1.60A/B1-350[»]
    ProteinModelPortaliQ88H32.
    SMRiQ88H32. Positions 2-342.
    ModBaseiSearch...
    MobiDBiSearch...

    Miscellaneous databases

    EvolutionaryTraceiQ88H32.

    Family & Domainsi

    Phylogenomic databases

    eggNOGiCOG2423.
    HOGENOMiHOG000137262.
    KOiK01750.
    OMAiVFVEYPP.
    OrthoDBiEOG6C0149.

    Family and domain databases

    Gene3Di3.30.1780.10. 1 hit.
    3.40.50.720. 1 hit.
    InterProiIPR016040. NAD(P)-bd_dom.
    IPR003462. ODC_Mu_crystall.
    IPR023401. ODC_N.
    [Graphical view]
    PfamiPF02423. OCD_Mu_crystall. 1 hit.
    [Graphical view]
    PIRSFiPIRSF001439. CryM. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q88H32-1 [UniParc]FASTAAdd to Basket

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    MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS    50
    EVGVIELMPV ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV 100
    LLSELTIATA LRTAATSLMA AQALARPNAR KMALIGNGAQ SEFQALAFHK 150
    HLGIEEIVAY DTDPLATAKL IANLKEYSGL TIRRASSVAE AVKGVDIITT 200
    VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL RNARVFVEYE 250
    PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED 300
    YTVLRYVLQQ AEKRGMGTKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA 350
    Length:350
    Mass (Da):38,425
    Last modified:June 1, 2003 - v1
    Checksum:i29323AD3D54F847B
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN69134.1.
    RefSeqiNP_745670.1. NC_002947.3.
    WP_010954390.1. NC_002947.3.

    Genome annotation databases

    EnsemblBacteriaiAAN69134; AAN69134; PP_3533.
    GeneIDi1046312.
    KEGGippu:PP_3533.
    PATRICi19945623. VBIPsePut30601_3757.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AE015451 Genomic DNA. Translation: AAN69134.1 .
    RefSeqi NP_745670.1. NC_002947.3.
    WP_010954390.1. NC_002947.3.

    3D structure databases

    Select the link destinations:
    PDBe
    RCSB PDB
    PDBj
    Links Updated
    Entry Method Resolution (Å) Chain Positions PDBsum
    1U7H X-ray 1.80 A/B 1-350 [» ]
    1X7D X-ray 1.60 A/B 1-350 [» ]
    ProteinModelPortali Q88H32.
    SMRi Q88H32. Positions 2-342.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 160488.PP_3533.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai AAN69134 ; AAN69134 ; PP_3533 .
    GeneIDi 1046312.
    KEGGi ppu:PP_3533.
    PATRICi 19945623. VBIPsePut30601_3757.

    Phylogenomic databases

    eggNOGi COG2423.
    HOGENOMi HOG000137262.
    KOi K01750.
    OMAi VFVEYPP.
    OrthoDBi EOG6C0149.

    Enzyme and pathway databases

    BioCyci PPUT160488:GIXO-3609-MONOMER.

    Miscellaneous databases

    EvolutionaryTracei Q88H32.

    Family and domain databases

    Gene3Di 3.30.1780.10. 1 hit.
    3.40.50.720. 1 hit.
    InterProi IPR016040. NAD(P)-bd_dom.
    IPR003462. ODC_Mu_crystall.
    IPR023401. ODC_N.
    [Graphical view ]
    Pfami PF02423. OCD_Mu_crystall. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF001439. CryM. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: KT2440Imported.
    2. "Ornithine cyclodeaminase: structure, mechanism of action, and implications for the mu-crystallin family."
      Goodman J.L., Wang S., Alam S., Ruzicka F.J., Frey P.A., Wedekind J.E.
      Biochemistry 43:13883-13891(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH NAD, ACTIVE SITE.

    Entry informationi

    Entry nameiQ88H32_PSEPK
    AccessioniPrimary (citable) accession number: Q88H32
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 1, 2003
    Last sequence update: June 1, 2003
    Last modified: October 1, 2014
    This is version 71 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    3D-structureImported, Complete proteome, Reference proteomeImported

    External Data

    Dasty 3