Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q88H32

- Q88H32_PSEPK

UniProt

Q88H32 - Q88H32_PSEPK

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Ornithine cyclodeaminase

Gene

PP_3533

Organism
Pseudomonas putida (strain KT2440)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sitei56 – 561Important for catalytic activityImported
Binding sitei84 – 841NADImported
Binding sitei112 – 1121NADImported
Binding sitei161 – 1611NADImported
Binding sitei202 – 2021NAD; via carbonyl oxygenImported
Active sitei228 – 2281Proton donor/acceptorImported
Binding sitei232 – 2321NADImported
Binding sitei331 – 3311NADImported

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi139 – 1402NADImported
Nucleotide bindingi225 – 2284NADImported
Nucleotide bindingi293 – 2942NADImported

GO - Molecular functioni

  1. nucleotide binding Source: UniProtKB-KW
Complete GO annotation...

Keywords - Ligandi

NADImported, Nucleotide-bindingImported

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-3609-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ornithine cyclodeaminaseImported
Gene namesi
Ordered Locus Names:PP_3533Imported
OrganismiPseudomonas putida (strain KT2440)Imported
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000556: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi160488.PP_3533.

Structurei

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1U7HX-ray1.80A/B1-350[»]
1X7DX-ray1.60A/B1-350[»]
ProteinModelPortaliQ88H32.
SMRiQ88H32. Positions 2-342.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ88H32.

Family & Domainsi

Phylogenomic databases

eggNOGiCOG2423.
HOGENOMiHOG000137262.
KOiK01750.
OMAiVFVEYPP.
OrthoDBiEOG6C0149.

Family and domain databases

Gene3Di3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view]
PfamiPF02423. OCD_Mu_crystall. 1 hit.
[Graphical view]
PIRSFiPIRSF001439. CryM. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88H32-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS
60 70 80 90 100
EVGVIELMPV ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV
110 120 130 140 150
LLSELTIATA LRTAATSLMA AQALARPNAR KMALIGNGAQ SEFQALAFHK
160 170 180 190 200
HLGIEEIVAY DTDPLATAKL IANLKEYSGL TIRRASSVAE AVKGVDIITT
210 220 230 240 250
VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL RNARVFVEYE
260 270 280 290 300
PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED
310 320 330 340 350
YTVLRYVLQQ AEKRGMGTKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA
Length:350
Mass (Da):38,425
Last modified:June 1, 2003 - v1
Checksum:i29323AD3D54F847B
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN69134.1.
RefSeqiNP_745670.1. NC_002947.3.

Genome annotation databases

EnsemblBacteriaiAAN69134; AAN69134; PP_3533.
GeneIDi1046312.
KEGGippu:PP_3533.
PATRICi19945623. VBIPsePut30601_3757.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN69134.1 .
RefSeqi NP_745670.1. NC_002947.3.

3D structure databases

Select the link destinations:
PDBe
RCSB PDB
PDBj
Links Updated
Entry Method Resolution (Å) Chain Positions PDBsum
1U7H X-ray 1.80 A/B 1-350 [» ]
1X7D X-ray 1.60 A/B 1-350 [» ]
ProteinModelPortali Q88H32.
SMRi Q88H32. Positions 2-342.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 160488.PP_3533.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN69134 ; AAN69134 ; PP_3533 .
GeneIDi 1046312.
KEGGi ppu:PP_3533.
PATRICi 19945623. VBIPsePut30601_3757.

Phylogenomic databases

eggNOGi COG2423.
HOGENOMi HOG000137262.
KOi K01750.
OMAi VFVEYPP.
OrthoDBi EOG6C0149.

Enzyme and pathway databases

BioCyci PPUT160488:GIXO-3609-MONOMER.

Miscellaneous databases

EvolutionaryTracei Q88H32.

Family and domain databases

Gene3Di 3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProi IPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view ]
Pfami PF02423. OCD_Mu_crystall. 1 hit.
[Graphical view ]
PIRSFi PIRSF001439. CryM. 1 hit.
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KT2440Imported.
  2. "Ornithine cyclodeaminase: structure, mechanism of action, and implications for the mu-crystallin family."
    Goodman J.L., Wang S., Alam S., Ruzicka F.J., Frey P.A., Wedekind J.E.
    Biochemistry 43:13883-13891(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH NAD, ACTIVE SITE.

Entry informationi

Entry nameiQ88H32_PSEPK
AccessioniPrimary (citable) accession number: Q88H32
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: October 29, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureImported, Complete proteome, Reference proteomeImported

External Data

Dasty 3