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Q88H32 (Q88H32_PSEPK) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Ornithine cyclodeaminase EMBL AAN69134.1
Gene names
Ordered Locus Names:PP_3533 EMBL AAN69134.1
OrganismPseudomonas putida (strain KT2440) [Complete proteome] [HAMAP] EMBL AAN69134.1
Taxonomic identifier160488 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length350 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Ontologies

Keywords
   LigandNAD PDB 1U7H PDB 1X7D
Nucleotide-binding PDB 1U7H PDB 1X7D
   Technical term3D-structure PDB 1U7H PDB 1X7D
Complete proteome
Gene Ontology (GO)
   Molecular_functionnucleotide binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding139 – 1402NAD PDB 1U7H PDB 1X7D
Nucleotide binding225 – 2284NAD PDB 1U7H PDB 1X7D
Nucleotide binding293 – 2942NAD PDB 1U7H PDB 1X7D

Sites

Active site2281Proton donor/acceptor PDB 1X7D
Binding site841NAD PDB 1U7H PDB 1X7D
Binding site1121NAD PDB 1U7H PDB 1X7D
Binding site1611NAD PDB 1U7H PDB 1X7D
Binding site2021NAD; via carbonyl oxygen PDB 1U7H PDB 1X7D
Binding site2321NAD PDB 1U7H PDB 1X7D
Binding site3311NAD PDB 1U7H PDB 1X7D
Site561Important for catalytic activity PDB 1X7D

Sequences

Sequence LengthMass (Da)Tools
Q88H32 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 29323AD3D54F847B

FASTA35038,425
        10         20         30         40         50         60 
MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS EVGVIELMPV 

        70         80         90        100        110        120 
ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV LLSELTIATA LRTAATSLMA 

       130        140        150        160        170        180 
AQALARPNAR KMALIGNGAQ SEFQALAFHK HLGIEEIVAY DTDPLATAKL IANLKEYSGL 

       190        200        210        220        230        240 
TIRRASSVAE AVKGVDIITT VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL 

       250        260        270        280        290        300 
RNARVFVEYE PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED 

       310        320        330        340        350 
YTVLRYVLQQ AEKRGMGTKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440."
Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A.P., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Kolonay J.F., Madupu R., Nelson W.C., White O. expand/collapse author list , Peterson J.D., Khouri H.M., Hance I., Chris Lee P., Holtzapple E.K., Scanlan D., Tran K., Moazzez A., Utterback T.R., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Duesterhoeft A., Tuemmler B., Fraser C.M.
Environ. Microbiol. 4:799-808(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KT2440.
[2]"Ornithine cyclodeaminase: structure, mechanism of action, and implications for the mu-crystallin family."
Goodman J.L., Wang S., Alam S., Ruzicka F.J., Frey P.A., Wedekind J.E.
Biochemistry 43:13883-13891(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH NAD, ACTIVE SITE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE015451 Genomic DNA. Translation: AAN69134.1.
RefSeqNP_745670.1. NC_002947.3.

3D structure databases

PDBe
RCSB PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1U7HX-ray1.80A/B1-350[»]
1X7DX-ray1.60A/B1-350[»]
ProteinModelPortalQ88H32.
SMRQ88H32. Positions 2-342.
ModBaseSearch...

Protein-protein interaction databases

STRING160488.PP_3533.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAN69134; AAN69134; PP_3533.
GeneID1046312.
KEGGppu:PP_3533.
PATRIC19945623. VBIPsePut30601_3757.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2423.
HOGENOMHOG000137262.
KOK01750.
OMAHINAIGG.
ProtClustDBPRK07589.

Enzyme and pathway databases

BioCycPPUT160488:GIXO-3609-MONOMER.

Family and domain databases

Gene3D3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProIPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view]
PfamPF02423. OCD_Mu_crystall. 1 hit.
[Graphical view]
PIRSFPIRSF001439. CryM. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ88H32.

Entry information

Entry nameQ88H32_PSEPK
AccessionPrimary (citable) accession number: Q88H32
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: May 29, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info