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Protein
Submitted name:

Putative ornithine cyclodeaminase

Gene

PP_3533

Organism
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at protein leveli

Functioni

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei56Important for catalytic activityCombined sources1
Binding sitei84NADCombined sources1
Binding sitei112NADCombined sources1
Binding sitei161NADCombined sources1
Binding sitei202NAD; via carbonyl oxygenCombined sources1
Active sitei228Proton donor/acceptorCombined sources1
Binding sitei232NADCombined sources1
Binding sitei331NADCombined sources1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi139 – 140NADCombined sources2
Nucleotide bindingi225 – 228NADCombined sources4
Nucleotide bindingi293 – 294NADCombined sources2

GO - Molecular functioni

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Keywords - Ligandi

NADCombined sources, Nucleotide-bindingCombined sources

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-3576-MONOMER.
BRENDAi4.3.1.12. 6163.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ornithine cyclodeaminaseImported (EC:4.3.1.-Imported)
Gene namesi
Ordered Locus Names:PP_3533Imported
OrganismiPseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)Imported
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000556 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi160488.PP_3533.

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1U7HX-ray1.80A/B1-350[»]
1X7DX-ray1.60A/B1-350[»]
ProteinModelPortaliQ88H32.
SMRiQ88H32.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ88H32.

Family & Domainsi

Phylogenomic databases

eggNOGiENOG4107QWB. Bacteria.
COG2423. LUCA.
HOGENOMiHOG000137262.
KOiK01750.
OMAiVNGHPRN.

Family and domain databases

Gene3Di3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view]
PfamiPF02423. OCD_Mu_crystall. 1 hit.
[Graphical view]
PIRSFiPIRSF001439. CryM. 1 hit.
SUPFAMiSSF51735. SSF51735. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88H32-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS
60 70 80 90 100
EVGVIELMPV ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV
110 120 130 140 150
LLSELTIATA LRTAATSLMA AQALARPNAR KMALIGNGAQ SEFQALAFHK
160 170 180 190 200
HLGIEEIVAY DTDPLATAKL IANLKEYSGL TIRRASSVAE AVKGVDIITT
210 220 230 240 250
VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL RNARVFVEYE
260 270 280 290 300
PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED
310 320 330 340 350
YTVLRYVLQQ AEKRGMGTKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA
Length:350
Mass (Da):38,425
Last modified:June 1, 2003 - v1
Checksum:i29323AD3D54F847B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69134.1.
RefSeqiNP_745670.1. NC_002947.4.
WP_010954390.1. NC_002947.4.

Genome annotation databases

GeneIDi1046312.
KEGGippu:PP_3533.
PATRICi19945623. VBIPsePut30601_3757.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69134.1.
RefSeqiNP_745670.1. NC_002947.4.
WP_010954390.1. NC_002947.4.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1U7HX-ray1.80A/B1-350[»]
1X7DX-ray1.60A/B1-350[»]
ProteinModelPortaliQ88H32.
SMRiQ88H32.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi160488.PP_3533.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1046312.
KEGGippu:PP_3533.
PATRICi19945623. VBIPsePut30601_3757.

Phylogenomic databases

eggNOGiENOG4107QWB. Bacteria.
COG2423. LUCA.
HOGENOMiHOG000137262.
KOiK01750.
OMAiVNGHPRN.

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-3576-MONOMER.
BRENDAi4.3.1.12. 6163.

Miscellaneous databases

EvolutionaryTraceiQ88H32.

Family and domain databases

Gene3Di3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProiIPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view]
PfamiPF02423. OCD_Mu_crystall. 1 hit.
[Graphical view]
PIRSFiPIRSF001439. CryM. 1 hit.
SUPFAMiSSF51735. SSF51735. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ88H32_PSEPK
AccessioniPrimary (citable) accession number: Q88H32
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 86 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.