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Q88H32 (Q88H32_PSEPK) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 69. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:PP_3533 EMBL AAN69134.1
OrganismPseudomonas putida (strain KT2440) [Complete proteome] [HAMAP] EMBL AAN69134.1
Taxonomic identifier160488 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length350 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding139 – 1402NAD PDB 1U7H PDB 1X7D
Nucleotide binding225 – 2284NAD PDB 1U7H PDB 1X7D
Nucleotide binding293 – 2942NAD PDB 1U7H PDB 1X7D

Sites

Active site2281Proton donor/acceptor PDB 1X7D
Metal binding2241Sodium; via carbonyl oxygen PDB 1U7H PDB 1X7D
Metal binding2271Sodium; via carbonyl oxygen PDB 1U7H PDB 1X7D
Metal binding2931Sodium; via carbonyl oxygen PDB 1U7H PDB 1X7D
Binding site841NAD PDB 1U7H PDB 1X7D
Binding site1121NAD PDB 1U7H PDB 1X7D
Binding site1611NAD PDB 1U7H PDB 1X7D
Binding site2021NAD; via carbonyl oxygen PDB 1U7H PDB 1X7D
Binding site2321NAD PDB 1U7H PDB 1X7D
Binding site3311NAD PDB 1U7H PDB 1X7D
Site561Important for catalytic activity PDB 1X7D

Sequences

Sequence LengthMass (Da)Tools
Q88H32 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 29323AD3D54F847B

FASTA35038,425
        10         20         30         40         50         60 
MTYFIDVPTM SDLVHDIGVA PFIGELAAAL RDDFKRWQAF DKSARVASHS EVGVIELMPV 

        70         80         90        100        110        120 
ADKSRYAFKY VNGHPANTAR NLHTVMAFGV LADVDSGYPV LLSELTIATA LRTAATSLMA 

       130        140        150        160        170        180 
AQALARPNAR KMALIGNGAQ SEFQALAFHK HLGIEEIVAY DTDPLATAKL IANLKEYSGL 

       190        200        210        220        230        240 
TIRRASSVAE AVKGVDIITT VTADKAYATI ITPDMLEPGM HLNAVGGDCP GKTELHADVL 

       250        260        270        280        290        300 
RNARVFVEYE PQTRIEGEIQ QLPADFPVVD LWRVLRGETE GRQSDSQVTV FDSVGFALED 

       310        320        330        340        350 
YTVLRYVLQQ AEKRGMGTKI DLVPWVEDDP KDLFSHTRGR AGKRRIRRVA 

« Hide

References

« Hide 'large scale' references
[1]"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440."
Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R., Nelson W., White O. expand/collapse author list , Peterson J., Khouri H., Hance I., Chris Lee P., Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Dusterhoft A., Tummler B., Fraser C.M.
Environ. Microbiol. 4:799-808(2002) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: KT2440 EMBL AAN69134.1.
[2]"Ornithine cyclodeaminase: structure, mechanism of action, and implications for the mu-crystallin family."
Goodman J.L., Wang S., Alam S., Ruzicka F.J., Frey P.A., Wedekind J.E.
Biochemistry 43:13883-13891(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) IN COMPLEX WITH NAD AND SODIUM, ACTIVE SITE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AE015451 Genomic DNA. Translation: AAN69134.1.
RefSeqNP_745670.1. NC_002947.3.

3D structure databases

PDBe
RCSB-PDB
PDBj
EntryMethodResolution (Å)ChainPositionsPDBsum
1U7HX-ray1.80A/B1-350[»]
1X7DX-ray1.60A/B1-350[»]
ProteinModelPortalQ88H32.
SMRQ88H32. Positions 2-342.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING160488.PP_3533.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaAAN69134; AAN69134; PP_3533.
GeneID1046312.
KEGGppu:PP_3533.
PATRIC19945623. VBIPsePut30601_3757.

Organism-specific databases

CMRSearch...

Phylogenomic databases

eggNOGCOG2423.
HOGENOMHOG000137262.
KOK01750.
OMAVFVEYPP.
OrthoDBEOG6C0149.

Enzyme and pathway databases

BioCycPPUT160488:GIXO-3609-MONOMER.

Family and domain databases

Gene3D3.30.1780.10. 1 hit.
3.40.50.720. 1 hit.
InterProIPR016040. NAD(P)-bd_dom.
IPR003462. ODC_Mu_crystall.
IPR023401. ODC_N.
[Graphical view]
PfamPF02423. OCD_Mu_crystall. 1 hit.
[Graphical view]
PIRSFPIRSF001439. CryM. 1 hit.
ProtoNetSearch...

Other

EvolutionaryTraceQ88H32.

Entry information

Entry nameQ88H32_PSEPK
AccessionPrimary (citable) accession number: Q88H32
Entry history
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: June 11, 2014
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)