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Q88FN1

- GLGB_PSEPK

UniProt

Q88FN1 - GLGB_PSEPK

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Protein
1,4-alpha-glucan branching enzyme GlgB
Gene
glgB, PP_4058
Organism
Pseudomonas putida (strain KT2440)
Status
Reviewed - Annotation score: 3 out of 5 - Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position By similarity.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei417 – 4171Nucleophile By similarity
Active sitei470 – 4701Proton donor By similarity

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciPPUT160488:GIXO-4137-MONOMER.
UniPathwayiUPA00164.

Protein family/group databases

CAZyiCBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgB (EC:2.4.1.18)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase
Alpha-(1->4)-glucan branching enzyme
Glycogen branching enzyme
Short name:
BE
Gene namesi
Name:glgB
Ordered Locus Names:PP_4058
OrganismiPseudomonas putida (strain KT2440)
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
ProteomesiUP000000556: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7367361,4-alpha-glucan branching enzyme GlgBUniRule annotation
PRO_0000188731Add
BLAST

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Protein-protein interaction databases

STRINGi160488.PP_4058.

Structurei

3D structure databases

ProteinModelPortaliQ88FN1.
SMRiQ88FN1. Positions 124-735.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiCOG0296.
HOGENOMiHOG000283037.
KOiK00700.
OMAiGELSHAW.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88FN1-1 [UniParc]FASTAAdd to Basket

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MNVTTRENGG LRQRDLDALA RAEHADPFAV LGPHGDGAGG QVVRAFLPNA    50
LKVRIQARDD GRVLAEMEQG SLPGLFSAHL DKAQPYQLHI VWAGGEQVTE 100
DPYSFGPQLG DMDLHLFAEG NHRDLSGRFG AQPTQVDGID GVCFSVWAPN 150
ARRVSVVGDF NNWDGRRHPM RLRHGAGVWE LFIPRLGVGE TYKFEVLGKD 200
GILPLKADPL ARATELPPST ASKVAGELSH AWQDHDWMAQ RAQRHAYNAP 250
LSIYELHPGS WRCELDEAGE IGRFYNWREL AERLVPYVQE LGFTHIELLP 300
IMEHPFGGSW GYQPLSMFAP TSRYGSAEDF AAFIDACHQG GIGVLLDWVP 350
AHFPTDEHGL ARFDGTALYE YDNPLEGYHQ DWNTLIYNLG RNEVRGFMMA 400
SALHWLKHFH IDGLRVDAVA SMLYRDYSRK AGEWVPNRHG GRENLEAIDF 450
IRHLNGVAAH EAPGALIIAE ESTAWPGVSQ PTQQGGLGFA YKWNMGWMHD 500
TLHYIQNDPV HRTYHHNEMS FGLIYAYSEH FILPISHDEV VHGKHSLIDK 550
MPGDRWQKFA NLRAYLTFMW AHPGKKLLFM GCEFGQWREW NHDAELDWYL 600
LQYPEHQGVQ RLVGDLNRLY REEPALHEQD CQPQGFQWLI GDDAQNSVYA 650
WLRWSSSGEP VLVVANFTPV PREGYRIGVP FGERWQELLN SDAELYAGSN 700
VGNLGAVASD EVASHGQPLS LALNLPPLGV LIMKPA 736
Length:736
Mass (Da):82,877
Last modified:June 1, 2003 - v1
Checksum:iC43AFBAEE689D94E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN69648.1.
RefSeqiNP_746184.1. NC_002947.3.

Genome annotation databases

EnsemblBacteriaiAAN69648; AAN69648; PP_4058.
GeneIDi1044393.
KEGGippu:PP_4058.
PATRICi19946740. VBIPsePut30601_4314.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AE015451 Genomic DNA. Translation: AAN69648.1 .
RefSeqi NP_746184.1. NC_002947.3.

3D structure databases

ProteinModelPortali Q88FN1.
SMRi Q88FN1. Positions 124-735.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 160488.PP_4058.

Protein family/group databases

CAZyi CBM48. Carbohydrate-Binding Module Family 48.
GH13. Glycoside Hydrolase Family 13.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai AAN69648 ; AAN69648 ; PP_4058 .
GeneIDi 1044393.
KEGGi ppu:PP_4058.
PATRICi 19946740. VBIPsePut30601_4314.

Phylogenomic databases

eggNOGi COG0296.
HOGENOMi HOG000283037.
KOi K00700.
OMAi GELSHAW.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci PPUT160488:GIXO-4137-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 2 hits.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KT2440.

Entry informationi

Entry nameiGLGB_PSEPK
AccessioniPrimary (citable) accession number: Q88FN1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 15, 2003
Last sequence update: June 1, 2003
Last modified: June 11, 2014
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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