Q88F13 (Q88F13_PSEPK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Polysaccharide deacetylase family protein EMBL AAN69866.1

Gene names

Ordered Locus Names:	PP4286
ORF Names:	PP_4286 EMBL AAN69866.1

Organism

Pseudomonas putida (strain KT2440) [Complete proteome] [HAMAP]

Taxonomic identifier

160488 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	308 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	carbohydrate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q88F13 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 9F0F9BCA91035F5A	FASTA	308	35,315
	10 20 30 40 50 60 MSADYPRDLI GYGNNPPHPQ WPGNARIALS FVLNYEEGGE RNILHGDKES EAFLSEMVAA 70 80 90 100 110 120 QPLQGQRNMS MESLYEYGSR AGVWRLLKLF KDSGVPLTIF AVAMAAQRHP DVIRAMVEAG 130 140 150 160 170 180 HEICSHGYRW IDYQNMDEAQ EREHMLEAIR ILTELTGERP LGWYTGRTGP NTRRLVMEEG 190 200 210 220 230 240 GFLYDSDTYD DDLPYWEPNN PTGKPHLVIP YTLDTNDMRF TQVQGFNCGE QFFQYLKDAF 250 260 270 280 290 300 DVLYAEGADA PKMLSIGLHC RLVGRPARLA ALKRFVDYAK SHDQVWFARR VDIARHWHAT HPYKNENA

References

[1]

"Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440." Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L., Beanan M., DeBoy R.T., Daugherty S., Kolonay J., Madupu R., Nelson W., White O. , Peterson J., Khouri H., Hance I., Chris Lee P., Holtzapple E., Scanlan D., Tran K., Moazzez A., Utterback T., Rizzo M., Lee K., Kosack D., Moestl D., Wedler H., Lauber J., Stjepandic D., Hoheisel J., Straetz M., Heim S., Kiewitz C., Eisen J.A., Timmis K.N., Dusterhoft A., Tummler B., Fraser C.M. Environ. Microbiol. 4:799-808(2002) [PubMed: 12534463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE015451 Genomic DNA. Translation: AAN69866.1.
RefSeq	NP_746402.1. NC_002947.3.
3D structure databases
ProteinModelPortal	Q88F13.
SMR	Q88F13. Positions 4-304.
ModBase	Search...
Protein-protein interaction databases
STRING	Q88F13.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1041762.
GenomeReviews	Gene locus PP4286 in contig AE015451_GR.
KEGG	ppu:PP_4286.
NMPDR	fig|160488.1.peg.4232.
PATRIC	19947230. VBIPsePut30601_4558.
TIGR	PP4286.
Phylogenomic databases
eggNOG	COG0726.
HOGENOM	HBG367725.
OMA	DLPYWEP.
ProtClustDB	CLSK866619.
Enzyme and pathway databases
BioCyc	PPUT160488:PP_4286-MONOMER.
Family and domain databases
InterPro	IPR011330. Glyco_hydro/deAcase_b/a-brl. IPR002509. Polysac_deacetylase. IPR017625. Urate_catabol_UraD_N. [Graphical view]
Gene3D	G3DSA:3.20.20.370. Polysac_deacetylase. 2 hits.
Pfam	PF01522. Polysacc_deac_1. 1 hit. [Graphical view]
SUPFAM	SSF88713. Glyco_hydro/deAcase_b/a-brl. 1 hit.
TIGRFAMs	TIGR03212. UraD_N-term-dom. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q88F13_PSEPK

Accession

Primary (citable) accession number: Q88F13

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	December 14, 2011
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)