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Protein
Submitted name:

Holocytochrome c synthetase

Gene

ccmF

Organism
Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Holocytochrome c synthetaseImported
Gene namesi
Name:ccmFImported
Ordered Locus Names:PP_4322Imported
OrganismiPseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)Imported
Taxonomic identifieri160488 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
Proteomesi
  • UP000000556 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 34HelicalSequence analysisAdd BLAST23
Transmembranei46 – 67HelicalSequence analysisAdd BLAST22
Transmembranei101 – 119HelicalSequence analysisAdd BLAST19
Transmembranei126 – 147HelicalSequence analysisAdd BLAST22
Transmembranei183 – 203HelicalSequence analysisAdd BLAST21
Transmembranei215 – 235HelicalSequence analysisAdd BLAST21
Transmembranei255 – 271HelicalSequence analysisAdd BLAST17
Transmembranei280 – 298HelicalSequence analysisAdd BLAST19
Transmembranei318 – 337HelicalSequence analysisAdd BLAST20
Transmembranei358 – 379HelicalSequence analysisAdd BLAST22
Transmembranei399 – 419HelicalSequence analysisAdd BLAST21
Transmembranei426 – 448HelicalSequence analysisAdd BLAST23
Transmembranei454 – 475HelicalSequence analysisAdd BLAST22
Transmembranei495 – 515HelicalSequence analysisAdd BLAST21
Transmembranei619 – 639HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Interactioni

Protein-protein interaction databases

STRINGi160488.PP_4322.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini94 – 301Cytochrom_C_asmInterPro annotationAdd BLAST208
Domaini321 – 641CcmF_CInterPro annotationAdd BLAST321

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG4105DA4. Bacteria.
COG1138. LUCA.
HOGENOMiHOG000274659.
KOiK02198.
OMAiQRATHRE.

Family and domain databases

InterProiIPR032523. CcmF_C.
IPR002541. Cyt_c_assembly.
IPR003567. Cyt_c_biogenesis.
IPR003568. Cyt_c_biogenesis_CcmF.
[Graphical view]
PANTHERiPTHR30009:SF0. PTHR30009:SF0. 2 hits.
PfamiPF16327. CcmF_C. 1 hit.
PF01578. Cytochrom_C_asm. 1 hit.
[Graphical view]
PRINTSiPR01410. CCBIOGENESIS.
PR01411. CCMFBIOGNSIS.
TIGRFAMsiTIGR00353. nrfE. 1 hit.

Sequencei

Sequence statusi: Complete.

Q88EY0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNAALVVPEL GQLAMILAIC FAVVQASVPL LGAWRGDSLW MSLARPAAWG
60 70 80 90 100
QFAFLAFAFA CLTHAFMTDN FSVAYVASNS NSALPWYYKF SAVWGAHEGS
110 120 130 140 150
LLLWALILGG WTFAVSVFSR QLPQVMLARV LAVMGMISVG FLSFLIITSN
160 170 180 190 200
PFQRLLPQVP TDGRDLNPLL QDFGLIVHPP MLYMGYVGFS VAFAFAIAAL
210 220 230 240 250
LGGRLDAAWA RWSRPWTIVA WAFLGVGITL GSWWAYYELG WGGWWFWDPV
260 270 280 290 300
ENASFMPWLV GTALIHSLAV TEKRGVFKSW TVLLAIAAFS LSLLGTFLVR
310 320 330 340 350
SGVLTSVHAF AADPSRGIFI LFFLLFVVGG SLTLFALRAP VVKSQVGFAL
360 370 380 390 400
WSRETLLLAN NLVLVVAASM ILLGTLYPLV LDALTGAKLS VGPPYFDALF
410 420 430 440 450
LPLMALLMVV LSVGVVVRWK DTPGKWLVSM MTPVLIGSAI LAPVAGFIVD
460 470 480 490 500
DFDWPTLTAF ALAAWVVLGG LRDIFDKTRH KGLVKGLPGL GRSYWGMQLA
510 520 530 540 550
HLGLAVCALG VVLSSNNSAE RDLRMAPGES VELGGYHFLF QGAKHFEGPN
560 570 580 590 600
FISDKGTIVV SREGREVTTL YPEKRLYTVQ QSMMTEAGID AGFTRDLYVA
610 620 630 640 650
LGEPLENGAW AVRVHIKPYV RWIWLGGLLT GLGGLLAALD RRYRVKVKTR
660
VRDVLGVSGA AA
Length:662
Mass (Da):72,090
Last modified:June 1, 2003 - v1
Checksum:iC31CF87B8D8FA5C0
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69901.1.
RefSeqiNP_746437.1. NC_002947.4.
WP_010955057.1. NC_002947.4.

Genome annotation databases

GeneIDi1041632.
KEGGippu:PP_4322.
PATRICi19947306. VBIPsePut30601_4596.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AE015451 Genomic DNA. Translation: AAN69901.1.
RefSeqiNP_746437.1. NC_002947.4.
WP_010955057.1. NC_002947.4.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi160488.PP_4322.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi1041632.
KEGGippu:PP_4322.
PATRICi19947306. VBIPsePut30601_4596.

Phylogenomic databases

eggNOGiENOG4105DA4. Bacteria.
COG1138. LUCA.
HOGENOMiHOG000274659.
KOiK02198.
OMAiQRATHRE.

Family and domain databases

InterProiIPR032523. CcmF_C.
IPR002541. Cyt_c_assembly.
IPR003567. Cyt_c_biogenesis.
IPR003568. Cyt_c_biogenesis_CcmF.
[Graphical view]
PANTHERiPTHR30009:SF0. PTHR30009:SF0. 2 hits.
PfamiPF16327. CcmF_C. 1 hit.
PF01578. Cytochrom_C_asm. 1 hit.
[Graphical view]
PRINTSiPR01410. CCBIOGENESIS.
PR01411. CCMFBIOGNSIS.
TIGRFAMsiTIGR00353. nrfE. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiQ88EY0_PSEPK
AccessioniPrimary (citable) accession number: Q88EY0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 1, 2003
Last sequence update: June 1, 2003
Last modified: November 2, 2016
This is version 74 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.