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Reviewed, UniProtKB/Swiss-Prot Q88EM0 (DADA1_PSEPK)

Last modified November 4, 2008. Version 35. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (1) | Third-party data | Customize display text xml rdf/xml gff fasta
Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents

Names and origin

Protein namesRecommended name:
    D-amino acid dehydrogenase 1 small subunit
    EC=1.4.99.1
Gene names
Name: dadA1
Synonyms: dadA-1
Ordered Locus Names: PP_4434
OrganismPseudomonas putida (strain KT2440) [Complete proteome] [HAMAP]
Taxonomic identifier160488 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas

Protein attributes

Sequence length432 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is not processed.
Protein existenceInferred from homology.

General annotation (Comments)

Function

Oxidative deamination of D-amino acids By similarity.

Catalytic activity

A D-amino acid + H(2)O + acceptor = a 2-oxo acid + NH(3) + reduced acceptor.

Cofactor

FAD By similarity.

Subunit structure

Heterodimer of a small and a large subunit By similarity.

Sequence similarities

Belongs to the dadA oxidoreductase family.

Ontologies

Keywords

   LigandFAD
Flavoprotein
   Molecular functionOxidoreductase
   Technical termComplete proteome

Gene Ontology (GO)

   Biological processalanine catabolic process

Inferred from electronic annotation. Source: HAMAP

oxidation reduction

Inferred from electronic annotation. Source: UniProtKB-KW

   Molecular functionD-amino-acid dehydrogenase activity

Inferred from electronic annotation. Source: HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 432432D-amino acid dehydrogenase 1 small subunit
PRO_0000166140

Regions

Nucleotide binding3 – 1715FAD Potential

Sequences

Sequence LengthMass (Da)Tools
Q88EM0-1 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 4D1B8B220915C751

FASTA43247,155
        10         20         30         40         50         60 
MRVLILGSGV VGTVSAYYLA REGFEVVVVD RQDGPAMETS FANAGQVSPG YASPWSAPGV 

        70         80         90        100        110        120 
PLKAIRWMLQ QHAPLAIKPT SSLDQYRWMI QMLRNCNPAS YAVNKERMVR ISEYSRDCLD 

       130        140        150        160        170        180 
ELRAETGISY EARQLGTTQL FRTQAQVDNA AKDIAILKQS GVPFELLDRD GIAKAEPALA 

       190        200        210        220        230        240 
SVRDKLAGAL RLPNDQTGDC QMFTRKLAKM AEELGVEFRF GCNIDRLECS GDTISGVWID 

       250        260        270        280        290        300 
GKLEVADQYV LALGSYSPHM LKPLGIQAPI YPLKGYSLTI PITDASMAPS STILDETYKV 

       310        320        330        340        350        360 
AITRFDDRIR VGGMAEIAGF DLSLNARRRD TLELVVGDLY PKGGDLTKAT FWTGLRPATP 

       370        380        390        400        410        420 
DGTPIVGKTK YRNLFLNTGH GTLGWTMSCG SGRLLADLMA GKKPKISAKG LDISRYSNQK 

       430 
EAHNHGNPAT AL 

« Hide

Cross-references

Sequence databases

AE015451 Genomic DNA. Translation: AAN70011.1.
RefSeqNP_746547.1.

3D structure databases

ModBaseSearch...

Genome annotation databases

GeneID1041878.
GenomeReviewsGene locus PP_4434 in contig AE015451_GR.
KEGGppu:PP_4434.
NMPDRfig|160488.1.peg.4377.
TIGRPP_4434.

Phylogenomic databases

HOGENOMQ88EM0.

Enzyme and pathway databases

BioCycPPUT160488:PP_4434-MON.

Family and domain databases

HAMAPMF_01202.
[Tree]
InterProIPR006076. FAD-dep_OxRdtase.
IPR003042. Rng_hydrolase.
[Graphical view]
PfamPF01266. DAO. 1 hit.
[Graphical view]
PRINTSPR00420. RNGMNOXGNASE.
ProDomPD000139. FAD_pyr_redox. 1 hit.
[Graphical view] [Entries sharing at least one domain]
ProtoNetSearch...

Entry information

Entry nameDADA1_PSEPK
AccessionPrimary (citable) accession number: Q88EM0
Entry history
Integrated into UniProtKB/Swiss-Prot: January 16, 2004
Last sequence update: June 1, 2003
Last modified: November 4, 2008
This is version 35 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation projectHAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)

Relevant documents

SIMILARITY comments

Index of protein domains and families

Names and origin · Protein attributes · General annotation (Comments) · Ontologies · Sequence annotation (Features) · Sequences · References · Cross-references · Entry information · Relevant documents