Q88EM0 (DADA1_PSEPK) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 54.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: D-amino acid dehydrogenase 1 small subunit EC=1.4.99.1 | ||||||
| Gene names |
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| Organism | Pseudomonas putida (strain KT2440) [Complete proteome] [HAMAP] | ||||||
| Taxonomic identifier | 160488 [NCBI] | ||||||
| Taxonomic lineage | Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas |
Protein attributes
| Sequence length | 432 AA. |
| Sequence status | Complete. |
| Protein existence | Inferred from homology |
General annotation (Comments)
| Function | Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202 |
| Catalytic activity | A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202 |
| Cofactor | FAD By similarity. HAMAP MF_01202 |
| Subunit structure | Heterodimer of a small and a large subunit By similarity. |
| Sequence similarities | Belongs to the DadA oxidoreductase family. |
Ontologies
| Keywords | |
|---|---|
| Ligand | FAD Flavoprotein |
| Molecular function | Oxidoreductase |
| Technical term | Complete proteome |
| Gene Ontology (GO) | |
| Molecular function | D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: EC |
| Complete GO annotation... | |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | |||
Molecule processing | ||||||||
|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 432 | 432 | D-amino acid dehydrogenase 1 small subunit HAMAP MF_01202 | PRO_0000166140 | ||||
Regions | ||||||||
| Nucleotide binding | 3 – 17 | 15 | FAD Potential | |||||
Sequences
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References
| [1] | "Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440." Nelson K.E., Weinel C., Paulsen I.T., Dodson R.J., Hilbert H., Martins dos Santos V.A.P., Fouts D.E., Gill S.R., Pop M., Holmes M., Brinkac L.M., Beanan M.J., DeBoy R.T., Daugherty S.C., Kolonay J.F., Madupu R., Nelson W.C., White O. Fraser C.M.Environ. Microbiol. 4:799-808(2002) [PubMed: 12534463] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: KT2440. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AE015451 Genomic DNA. Translation: AAN70011.1. |
| RefSeq | NP_746547.1. NC_002947.3. |
3D structure databases | |
| ProteinModelPortal | Q88EM0. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q88EM0. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 1041878. |
| GenomeReviews | Gene locus PP_4434 in contig AE015451_GR. |
| KEGG | ppu:PP_4434. |
| NMPDR | fig|160488.1.peg.4377. |
| PATRIC | 19947542. VBIPsePut30601_4715. |
| TIGR | PP_4434. |
Phylogenomic databases | |
| eggNOG | COG0665. |
| HOGENOM | HBG729204. |
| OMA | TIMDETH. |
| PhylomeDB | Q88EM0. |
| ProtClustDB | PRK00711. |
Enzyme and pathway databases | |
| BioCyc | PPUT160488:PP_4434-MONOMER. |
Family and domain databases | |
| HAMAP | MF_01202. DadA. [Tree] |
| InterPro | IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view] |
| KO | K00285. |
| Pfam | PF01266. DAO. 1 hit. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | DADA1_PSEPK | ||||||||
| Accession | Primary (citable) accession number: Q88EM0 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Prokaryotic Protein Annotation Program | ||||||||
Relevant documents
| SIMILARITY comments Index of protein domains and families |

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