Q88BB6 (DADA_PSESM) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
D-amino acid dehydrogenase small subunit
EC=1.4.99.1

Gene names

Name:	dadA
Ordered Locus Names:	PSPTO_0101

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP]

Taxonomic identifier

223283 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	433 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity. HAMAP MF_01202
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202
Cofactor	FAD By similarity. HAMAP MF_01202
Subunit structure	Heterodimer of a small and a large subunit By similarity.
Sequence similarities	Belongs to the DadA oxidoreductase family.

Ontologies

Keywords
Ligand	FAD Flavoprotein
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 433	433	D-amino acid dehydrogenase small subunit HAMAP MF_01202		PRO_0000166142
Regions
	Nucleotide binding	3 – 17	15	FAD Potential

Sequences

	Sequence		Length	Mass (Da)
	Q88BB6 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 16581168E6DB0D87	FASTA	433	46,928
	10 20 30 40 50 60 MRVLVLGSGV IGTTSAYYLA RAGFQVTVVD RQPAVGMETS FANAGQVSPG YASPWAAPGV 70 80 90 100 110 120 PLKAIKWLLQ RHSPLAIKAT ADIDQYLWMA QMLRNCTANR YAVNKERMVR LSEYSRDCLD 130 140 150 160 170 180 ELRIETGIAY EGRSLGTTQL FRTQAQLDNA AKDIAVLEQS GVPYELLDRA GIARVEPALA 190 200 210 220 230 240 GVTGILSGAL RLPNDQTGDC QLFTTRLAQM AVELGVEFRY GQNIERLEHA GDTVSGVWID 250 260 270 280 290 300 GVLETADRYV LALGSYSPQL LKPLGIKAPV YPLKGYSLTV PISNPAMAPT STILDETYKV 310 320 330 340 350 360 AITRFDNRIR VGGMAEIAGF DLSLNPRRRE TLEMIVGDLY PQGGDLSQAS FWTGLRPTTP 370 380 390 400 410 420 DGTPIVGATP LRNLFLNTGH GTLGWTMACG SGRLLADLIA RKRPQISAAG LDISRYGNPQ 430 ENAQHVNPAP AHQ

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed: 12928499] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AE016853 Genomic DNA. Translation: AAO53655.1.
RefSeq	NP_789960.1. NC_004578.1.
3D structure databases
ProteinModelPortal	Q88BB6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	1181709.
GenomeReviews	Gene locus PSPTO_0101 in contig AE016853_GR.
KEGG	pst:PSPTO_0101.
NMPDR	fig|223283.1.peg.98.
PATRIC	19991352. VBIPseSyr93040_0106.
TIGR	PSPTO_0101.
Phylogenomic databases
HOGENOM	HBG729204.
OMA	VDRQPAV.
ProtClustDB	PRK00711.
Enzyme and pathway databases
BioCyc	PSYR223283:PSPTO_0101-MONOMER.
Family and domain databases
HAMAP	MF_01202. DadA. [Tree]
InterPro	IPR023080. D-aa_DH_ssu_DadA. IPR006076. FAD-dep_OxRdtase. [Graphical view]
KO	K00285.
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

DADA_PSESM

Accession

Primary (citable) accession number: Q88BB6

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 16, 2004
Last sequence update:	June 1, 2003
Last modified:	January 25, 2012
This is version 51 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program