Reviewed, UniProtKB/Swiss-Prot Q88BB6 (DADA_PSESM)

Names and origin

Protein names

Recommended name:
    D-amino acid dehydrogenase small subunit
    EC=1.4.99.1

Gene names

Name:	dadA
Ordered Locus Names:	PSPTO_0101

Organism

Pseudomonas syringae pv. tomato [Complete proteome] [HAMAP]

Taxonomic identifier

323 [NCBI]

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas

Protein attributes

Sequence length	433 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Inferred from homology.

General annotation (Comments)

Function	Oxidative deamination of D-amino acids By similarity.
Catalytic activity	A D-amino acid + H2O + acceptor = a 2-oxo acid + NH3 + reduced acceptor. HAMAP MF_01202
Cofactor	FAD By similarity.
Subunit structure	Heterodimer of a small and a large subunit By similarity.
Sequence similarities	Belongs to the dadA oxidoreductase family.

Ontologies

Keywords
Ligand	FAD Flavoprotein
Molecular function	Oxidoreductase
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	alanine catabolic process Inferred from electronic annotation. Source: HAMAP oxidation reduction Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	D-amino-acid dehydrogenase activity Inferred from electronic annotation. Source: HAMAP
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 433	433	D-amino acid dehydrogenase small subunit HAMAP MF_01202		PRO_0000166142
Regions
	Nucleotide binding	3 – 17	15	FAD Potential

Sequences

	Sequence		Length	Mass (Da)
	Q88BB6-1 [UniParc]. Last modified June 1, 2003. Version 1. Checksum: 16581168E6DB0D87	FASTA	433	46,928
	10 20 30 40 50 60 MRVLVLGSGV IGTTSAYYLA RAGFQVTVVD RQPAVGMETS FANAGQVSPG YASPWAAPGV 70 80 90 100 110 120 PLKAIKWLLQ RHSPLAIKAT ADIDQYLWMA QMLRNCTANR YAVNKERMVR LSEYSRDCLD 130 140 150 160 170 180 ELRIETGIAY EGRSLGTTQL FRTQAQLDNA AKDIAVLEQS GVPYELLDRA GIARVEPALA 190 200 210 220 230 240 GVTGILSGAL RLPNDQTGDC QLFTTRLAQM AVELGVEFRY GQNIERLEHA GDTVSGVWID 250 260 270 280 290 300 GVLETADRYV LALGSYSPQL LKPLGIKAPV YPLKGYSLTV PISNPAMAPT STILDETYKV 310 320 330 340 350 360 AITRFDNRIR VGGMAEIAGF DLSLNPRRRE TLEMIVGDLY PQGGDLSQAS FWTGLRPTTP 370 380 390 400 410 420 DGTPIVGATP LRNLFLNTGH GTLGWTMACG SGRLLADLIA RKRPQISAAG LDISRYGNPQ 430 ENAQHVNPAP AHQ

References

[1]

"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. , Zhou L., Liu J., Yuan Q., Khouri H.M., Fedorova N.B., Tran B., Russell D., Berry K.J., Utterback T.R., Van Aken S.E., Feldblyum T.V., D'Ascenzo M., Deng W.-L., Ramos A.R., Alfano J.R., Cartinhour S., Chatterjee A.K., Delaney T.P., Lazarowitz S.G., Martin G.B., Schneider D.J., Tang X., Bender C.L., White O., Fraser C.M., Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed: 12928499] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AE016853 Genomic DNA. Translation: AAO53655.1.
RefSeq	NP_789960.1.
3D structure databases
ModBase	Search...
Genome annotation databases
GeneID	1181709.
GenomeReviews	Gene locus PSPTO_0101 in contig AE016853_GR.
KEGG	pst:PSPTO_0101.
NMPDR	fig|223283.1.peg.98.
TIGR	PSPTO_0101.
Phylogenomic databases
HOGENOM	Q88BB6.
OMA	Q88BB6. MFQKHAP.
Enzyme and pathway databases
BioCyc	PSYR223283:PSPTO_0101-MON.
BRENDA	1.4.99.1. 289554.
Family and domain databases
HAMAP	MF_01202. [Tree]
InterPro	IPR006076. FAD-dep_OxRdtase. [Graphical view]
Pfam	PF01266. DAO. 1 hit. [Graphical view]
ProDom	PD000139. FAD_pyr_redox. 1 hit. [Graphical view] [Entries sharing at least one domain]
ProtoNet	Search...

Entry information

Entry name

DADA_PSESM

Accession

Primary (citable) accession number: Q88BB6

Entry history

Integrated into UniProtKB/Swiss-Prot:	January 16, 2004
Last sequence update:	June 1, 2003
Last modified:	June 16, 2009
This is version 35 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)