Peptidyl-prolyl cis-trans isomerase - Pseudomonas syringae pv. tomato (strain DC3000)

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Q88B84 (Q88B84_PSESM) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 74. History...

Clusters with 100%, 90%, 50% identity |

Third-party data

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info Customize order

Names and origin

Protein names

Recommended name:
Peptidyl-prolyl cis-trans isomerase RuleBase RU004231
EC=5.2.1.8 RuleBase RU003915

Gene names

Ordered Locus Names:

PSPTO_0135 EMBL AAO53689.1

Organism

Pseudomonas syringae pv. tomato (strain DC3000) [Complete proteome] [HAMAP] EMBL AAO53689.1

Taxonomic identifier

Taxonomic lineage

Bacteria › Proteobacteria › Gammaproteobacteria › Pseudomonadales › Pseudomonadaceae › Pseudomonas ›

Protein attributes

Sequence length	224 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Catalytic activity	Peptidylproline (omega=180) = peptidylproline (omega=0). RuleBase RU003915
Sequence similarities	Contains 1 PPIase FKBP-type domain. RuleBase RU004231

Ontologies

Keywords
Molecular function	Isomerase Rotamase RuleBase RU003715
Technical term	3D-structure PDB 3OE2 Complete proteome
Gene Ontology (GO)
Biological_process	protein folding Inferred from electronic annotation. Source: UniProtKB-KW protein peptidyl-prolyl isomerization Inferred from electronic annotation. Source: GOC
Molecular_function	peptidyl-prolyl cis-trans isomerase activity Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequences

Sequence

Length

Mass (Da)

Tools

Q88B84 [UniParc].

Last modified June 1, 2003. Version 1.
Checksum: 9849CDC6FB98EE41
Show »

224

24,215

        10         20         30         40         50         60 
MSRYLLTSLF LLLPLAQAAE APPDNDAHDL AYSLGASLGE RLHQEVPDLD LKALVDGLKQ 

        70         80         90        100        110        120 
AYQGKPLALK QERIDQILRE HDAAIAQAET AGTDAPTEAA LKAERTFMAG EKAKPGVKEL 

       130        140        150        160        170        180 
ADGILMTELT PGTGPKPDAN GRVEVRYVGR LPDGKIFDQS TQPQWFRLDS VISGWTSALQ 

       190        200        210        220 
NMPTGAKWRL VIPSDQAYGA EGAGDLIDPF TPLVFEIELI AVSQ

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The complete genome sequence of the Arabidopsis and tomato pathogen Pseudomonas syringae pv. tomato DC3000." Buell C.R., Joardar V., Lindeberg M., Selengut J., Paulsen I.T., Gwinn M.L., Dodson R.J., DeBoy R.T., Durkin A.S., Kolonay J.F., Madupu R., Daugherty S.C., Brinkac L.M., Beanan M.J., Haft D.H., Nelson W.C., Davidsen T.M., Zafar N. Collmer A. Proc. Natl. Acad. Sci. U.S.A. 100:10181-10186(2003) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DC3000 EMBL AAO53689.1.
[2]	"Crystal structure of peptidyl-prolyl cis-trans isomerase PPIase from Pseudomonas syringae pv. tomato str. DC3000 (PSPTO DC3000) at 1.6 resolution." Zhang H.M., Li M., Gao Y., Chang W. Submitted (AUG-2010) to the PDB data bank Cited for: X-RAY CRYSTALLOGRAPHY (1.60 ANGSTROMS) OF 26-224.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

AE016853 Genomic DNA. Translation: AAO53689.1.

RefSeq

NP_789994.1. NC_004578.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
3OE2	X-ray	1.60	A	26-224	[»]

ProteinModelPortal

ModBase

Protein-protein interaction databases

STRING

223283.PSPTO_0135.

Protocols and materials databases

StructuralBiologyKnowledgebase

Genome annotation databases

EnsemblBacteria

AAO53689; AAO53689; PSPTO_0135.

GeneID

KEGG

pst:PSPTO_0135.

PATRIC

19991424. VBIPseSyr93040_0142.

Organism-specific databases

CMR

Phylogenomic databases

eggNOG

HOGENOM

KO

OMA

ProtClustDB

Enzyme and pathway databases

BioCyc

PSYR223283:GJIX-134-MONOMER.

Family and domain databases

Gene3D

1.10.287.460. 1 hit.

InterPro

IPR023566. PPIase_FKBP.
IPR001179. PPIase_FKBP_dom.
IPR000774. PPIase_FKBP_N.
[Graphical view]

PANTHER

PTHR10516. PTHR10516. 1 hit.

Pfam

PF00254. FKBP_C. 1 hit.
PF01346. FKBP_N. 1 hit.
[Graphical view]

PROSITE

PS50059. FKBP_PPIASE. 1 hit.
[Graphical view]

ProtoNet

Entry information

Entry name

Q88B84_PSESM

Accession

Primary (citable) accession number: Q88B84

Entry history

Integrated into UniProtKB/TrEMBL:	June 1, 2003
Last sequence update:	June 1, 2003
Last modified:	May 1, 2013
This is version 74 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)

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Names·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info